Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T27D1.1
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Query: T27D1.1 CE03745 locus:cyp-9 cyclophilin related protein status:Confirmed SW:Q09637 protein_id:CAA85495.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pro_isomerase Cyclophilin type peptidyl-prolyl cis-tr 313.0 3.5e-90 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
pro_isomerase 1/1 6 175 .. 1 180 [] 313.0 3.5e-90
Alignments of top-scoring domains:
pro_isomerase: domain 1 of 1, from 6 to 175: score 313.0, E = 3.5e-90
*->kvyFDitiggkplGrIvfeLfgdvvPkTaeNFraLctgekgfg....
+v++Di++++ +GrI++ Lf +++PkT+eNFraLctge g++++++
T27D1.1 6 RVFLDISVDENLIGRIEIRLFVEDAPKTCENFRALCTGEVGMTpnnk 52
kklfYkGstFHRVIpnFMiQGGDftagnqGtGGkSIYGekFkDEnfnlkH
l+Yk ++FHR++++FMiQGGD+t+g+ G GG+SIYG +F+DE f+lkH
T27D1.1 53 ARLHYKQNEFHRIVKKFMIQGGDITEGD-GRGGFSIYGRYFDDEKFKLKH 101
drhepGtLSMANaGdpnTNGSQFFItTvktpwLDGKHVvdfGYAVFGkVv
r p +LSMAN G pn+N SQFFItT+++p+ +GKHV VFG+Vv
T27D1.1 102 SR--PYLLSMANKG-PNSNSSQFFITTAAAPHCNGKHV------VFGEVV 142
eGmdVVkkIenvgtdeyGksgdkpskeVkIadcgqle<-*
+G VV++I n+ d +kp+++V I++cg+l
T27D1.1 143 KGQNVVDYIDNLAVD----DKSKPLAKVLISNCGELV 175