Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T27A8.1
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Query: T27A8.1 CE18294 carboxypeptidase status:Partially_confirmed TR:Q22825 protein_id:CAA92226.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Zn_carbOpept Zinc carboxypeptidase 177.2 2.7e-49 2
Luteo_PO Luteovirus PO protein 5.2 2.5 1
Thr_dehydrat_C C-terminal regulatory domain of Threon 4.8 4.3 1
Gpi16 Gpi16 subunit, GPI transamidase compon 4.3 1.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Gpi16 1/1 4 25 .. 1 22 [. 4.3 1.9
Zn_carbOpept 1/2 56 241 .. 1 215 [] 177.8 1.8e-49
Zn_carbOpept 2/2 264 276 .. 113 125 .. -0.1 98
Thr_dehydrat_C 1/1 346 364 .. 23 42 .. 4.8 4.3
Luteo_PO 1/1 397 407 .. 230 247 .] 5.2 2.5
Alignments of top-scoring domains:
Gpi16: domain 1 of 1, from 4 to 25: score 4.3, E = 1.9
*->lLlLlalvllsaiaiaegldEe<-*
+Ll+++ ++ls+++ ++ + E+
T27A8.1 4 ILLVFLFSALSQCSRLAEEEEQ 25
Zn_carbOpept: domain 1 of 2, from 56 to 241: score 177.8, E = 1.8e-49
*->ytYhnlqeilawLdsvaseypslvrkesiGkSyeGRelyvLkisadp
+++ n+ ++ + ++++++p+l++ +s G+S++GRel+vL +s+ p
T27A8.1 56 FSHMNYSTLTDHIHNLHRKFPNLTHIYSAGQSVQGRELWVLVVSRYP 102
gehgpgkPeifldariHarEwvsselmlglleellseygsdariTkLrds
eh++ Pe++++a++H++E ++ ++ l+ ll++y+s+ i +L+ds
T27A8.1 103 IEHRKLIPEFKYVANMHGNEVTGRVFLVSLAHTLLENYNSNLWIRQLVDS 152
lrfyIvPvlNPDGgEYevtwgsdRmWRKtRsgragSscvGtDLNRNwpdq
+r++++P++NPDG Ye ++ d gr+ +++G DLNRN+p
T27A8.1 153 TRIHLMPSMNPDG--YEHASEGDQA---GVTGRQ--NANGKDLNRNFPSR 195
WgceggasssPCSEtYrgpaaesePEtkavkdfirsrvlgekgqikvvly
+ + p+ e PEt a++++ r qi+++l+
T27A8.1 196 FP-N------------YFPTSEIQPETIAIMNWT--R------QIPFALS 224
idlHgySqlanlfPYGyt<-*
++lHg+ l ++P+++
T27A8.1 225 ANLHGGTTLV-NYPFDDF 241
Zn_carbOpept: domain 2 of 2, from 264 to 276: score -0.1, E = 98
*->YevtwgsdRmWRK<-*
Y +++g+ RmW+K
T27A8.1 264 YTYARGHERMWKK 276
Thr_dehydrat_C: domain 1 of 1, from 346 to 364: score 4.8, E = 4.3
*->aLkkFlsllggrnNDITlFe<-*
aL+kF +l++g N +T+F+
T27A8.1 346 ALLKFIDLIHGFAN-FTRFS 364
Luteo_PO: domain 1 of 1, from 397 to 407: score 5.2, E = 2.5
*->YGELVVdggPidFWRlAN<-*
YGE g FWRlAN
T27A8.1 397 YGE-----G--EFWRLAN 407