Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T27A10.3
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Query: T27A10.3 CE07553 choline kinase status:Confirmed TR:Q22820 protein_id:AAB52502.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Choline_kinase Choline/ethanolamine kinase 459.0 5.7e-140 1
DUF195 Uncharacterized BCR, YigN family, COG1 2.4 10 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF195 1/1 131 171 .. 1 33 [. 2.4 10
Choline_kinase 1/1 60 331 .. 1 396 [] 459.0 5.7e-140
Alignments of top-scoring domains:
DUF195: domain 1 of 1, from 131 to 171: score 2.4, E = 10
*->skrLesilk........pvretLeeflkqreeslsksfesv<-*
+kr+ +++++ ++++++pv e++++fl+q++ s+ k+ +++
T27A10.3 131 AKRIAQLHSsvptngktPVFEKMRTFLQQLNPSFEKESQQN 171
Choline_kinase: domain 1 of 1, from 60 to 331: score 459.0, E = 5.7e-140
*->eapkvLLRiYGnnvdrQgevidreaElvnFaiLSergLGPkLYGfFe
++++v++R++G+n++ + vidre+E++++++L+e+g++++LYG+F+
T27A10.3 60 GTEHVIFRVFGHNTN--K-VIDRENEVIAWKQLAEYGFAAPLYGKFN 103
nGRfEeFlpnSrTLtcddirdpeiSrkIAkrmaelHnlkVPilkkprevk
nG++++Fl+ +++L+++++rd++++++IAkr+a+lH+ +VP+++k+
T27A10.3 104 NGLICGFLE-GKSLAIEQMRDSKFNMNIAKRIAQLHS-SVPTNGKTP--- 148
emPacwqtmrqWLkqikslfsWVGdyeIisenlrtkvtkskkpksvsikd
++++mr++L+q++++f+ k+++++++++++++d
T27A10.3 149 ----VFEKMRTFLQQLNPSFE--------------KESQQNFFHENFPTD 180
LeeEfinfleklvEddkDklelfespvVFCHNDLQeGNiLllsstmSssl
L++E i+++ek+ ++++++p+VFCHNDL+++Ni+++s
T27A10.3 181 LGAE-ISKIEKM-------IVMLKEPIVFCHNDLLVHNIVYDS------- 215
fpsSskvivddivnrpkkenssdkeLvlIDFEYAsYNyrgFDLANHFcEw
++k++++ID+EYA++Ny+ +D+ANHFcE+
T27A10.3 216 ---------------------EKKSIEFIDYEYAFPNYALYDIANHFCEY 244
myDYndeeaPfykidyskyPtkeqrlaFieaYleesnkiiknasllktdi
++ +e++P dysk+ tk++++aFi++Yl++sn+
T27A10.3 245 AG---VEGSP----DYSKCLTKDEKWAFINDYLRFSNG------------ 275
sdlskeesdkevenLikeviqFaPashLFWalWallqaarlairrllegd
ke+sd+++++++k++++F++a+hLFWa+Wal+qa
T27A10.3 276 ----KEHSDTRIATMFKNLLLFEAAAHLFWAVWALVQA------------ 309
dekedlaksedeadreekkekedekvelvstidFDYlgYArdRfavYfh<
+ +stidFDYl+YA++R+++Y++
T27A10.3 310 --------------------------Q-NSTIDFDYLTYAHARYQQYQK 331
-*
T27A10.3 - -