hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T26G10.1
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Query:  T26G10.1  CE00337   RNA helicase status:Partially_confirmed SW:P34580 protein_id:CAA82362.1

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N
--------   -----------                                  -----    ------- ---
DEAD       DEAD/DEAH box helicase                       283.9    2.3e-86   1
helicase_C Helicase conserved C-terminal domain         119.3    1.9e-32   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
DEAD         1/1      57   261 ..     1   207 []   283.9  2.3e-86
helicase_C   1/1     307   378 ..     1    72 []   119.3  1.9e-32

Alignments of top-scoring domains:
DEAD: domain 1 of 1, from 57 to 261: score 283.9, E = 2.3e-86
                   *->kalkklgfekptpiQaeaipailegrDvlvqApTGSGKTlAfllPil
                      +a ++lg+ kp++iQ++a+p++l+g+Dv++ A TGSGKT Af++P+l
    T26G10.1    57    DACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVL 103

                   eallkg...pqalvlaPTRELAnQiyeelkklgkgl.lrvalltgg.skk
                   ++ll++++ + +lvl+PTRELA Qi +++++lg+g++l++a+++gg +++
    T26G10.1   104 QSLLDHpqaFFCLVLTPTRELAFQIGQQFEALGSGIgLIAAVIVGGvDMA 153

                   eqrrklrkgpdilvaTPgrlldhlengkllekrlslknlkllVlDEADrm
                   +q+++l ++p+i+vaTPgrl dhlen+k+    ++lk lk+l++DEADr+
    T26G10.1   154 AQAMALARRPHIIVATPGRLVDHLENTKG----FNLKALKFLIMDEADRI 199

                   ldmgkahgFgpdleeilsrlpknrqtllfSATlpneverlaklflknpve
                   l+m    +F+ +l++il+ +p++r+t lfSAT++++v +l + +l++p +
    T26G10.1   200 LNM----DFEVELDKILKVIPRERRTYLFSATMTKKVSKLERASLRDPAR 245

                   vsvkse.ptplrikqk<-*
                   vsv+s+ +t +++kq+
    T26G10.1   246 VSVSSRyKTVDNLKQH    261

helicase_C: domain 1 of 1, from 307 to 378: score 119.3, E = 1.9e-32
                   *->gikvarlhGglsqeeReeilekFrngkskvLvaTdvaarGiDipdvn
                      g ++++lhG++sqe+R   l+kF++  + +Lv+TdvaarG+Dip+v+
    T26G10.1   307    GMQAVPLHGQMSQEKRLGSLNKFKSKAREILVCTDVAARGLDIPHVD 353

                   lVInydlpwnpesyiQRiGRaGRaG<-*
                   +VInyd+p    +y++R+GR++RaG
    T26G10.1   354 MVINYDMPSQSKDYVHRVGRTARAG    378

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