Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T26E3.3
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Query: T26E3.3 CE28089 locus:par-6 PDZ domain (Also known as DHR or GLGF). status:Confirmed TR:Q9NAN2 protein_id:CAB61018.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PB1 PB1 domain 59.8 1.9e-15 1
PDZ PDZ domain (Also known as DHR or GLGF) 30.0 4.5e-07 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PB1 1/1 14 96 .. 1 85 [] 59.8 1.9e-15
PDZ 1/1 156 248 .. 1 84 [] 30.0 4.5e-07
Alignments of top-scoring domains:
PB1: domain 1 of 1, from 14 to 96: score 59.8, E = 1.9e-15
*->tvdvKlrYgggirr...ilsvsrdisfeeLrskvakrfgl...tfkl
t+ vK +++ ++rr + ++ +++s++ +rs+v+k ++l++ +f+l
T26E3.3 14 TLQVKSKFDSEWRRfsiPMHSASGVSYDGFRSLVEKLHHLesvQFTL 60
kYpDeDgDdlVsissDeDLeeaieeyrsllsegsktlrlfvfpa<-*
Y g dl++i++D++L++ +e +r+ lrl+++
T26E3.3 61 CYNSTGG-DLLPITNDDNLRKSFESARP-------LLRLLIQRR 96
PDZ: domain 1 of 1, from 156 to 248: score 30.0, E = 4.5e-07
*->evtlekevkrgglGfsikggsdk...........givvsevlpGsga
v+l k+ + +lGf i g++ + ++++ + +gi++s+++ G g
T26E3.3 156 RVRLCKHGQERPLGFYIRDGTSVrvtergvvkvsGIFISRLVDG-GL 201
AeagGrLkeGDvIlsvNGqdvenmsheravlaikgsggsevtLtvlRd<-
Ae G L ++D +l+vNG v + +++++ +++ + +tv+++
T26E3.3 202 AESTGLLGVNDEVLEVNGIEVLGKTLDQVTDMMVANAH-NLIITVKPA 248
*
T26E3.3 - -