Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T26A5.4
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Query: T26A5.4 CE00701 Beta-mannosyltransferase status:Partially_confirmed TR:Q22797 protein_id:AAC77507.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Glycos_transf_1 Glycosyl transferases group 1 53.6 1.2e-13 1
CENP-B_N CENP-B N-terminal DNA-binding domain 4.8 8.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CENP-B_N 1/1 197 213 .. 27 43 .. 4.8 8.7
Glycos_transf_1 1/1 250 427 .. 1 191 [] 53.6 1.2e-13
Alignments of top-scoring domains:
CENP-B_N: domain 1 of 1, from 197 to 213: score 4.8, E = 8.7
*->kksvAreFgipkSTlsd<-*
+++++++ gi +ST++d
T26A5.4 197 RRDLMDRWGIRASTFYD 213
Glycos_transf_1: domain 1 of 1, from 250 to 427: score 53.6, E = 1.2e-13
*->dreeirkklgikedkkiilfvGRlvpeKGidllieAfkkLkkkpkll
+++ + +++ + ++++l+ +++p+ +++ l++A+ + k+
T26A5.4 250 HKSSNGVVQLLTTRPIVFLSSTSWTPDERFEILLDALVAYDKTI--- 293
klnpnlkLvivGgpYdsedgeeedelkklaeklglednviflGfvpdedl
p + ++i G +g++++++ +++++++l++ ++ ++ ed
T26A5.4 294 -GLPRVLMIITG------KGPLKAKYLQEIHEKNLKNVDVLTPWLEAEDY 336
pelyks..advfvlPSry.EgFGivllEAmAcGlPVIatncvgGipEvvk
p+ ++s + + +++S+++ ++++ ++ + + +P +a i E+v
T26A5.4 337 PKILASadLGISLHTSTSgLDLPMKVVDMFGAKVPALALK-FKCIDELVE 385
dgetGllvepgqdpealaeaiekllkdeekkdllelrkrlgenarkr<-*
+ +G+l++++ e+l+++i++l + ++ rl++n++++
T26A5.4 386 EKTNGYLFDDS---EQLSRQIIELSRGFPNNC--NELIRLKKNTQEQ 427