Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T23F2.1
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Query: T23F2.1 CE28488 glycosyltransferase status:Partially_confirmed TR:Q22698 protein_id:AAA80383.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Glycos_transf_1 Glycosyl transferases group 1 91.7 2.7e-24 1
pp-binding Phosphopantetheine attachment site 7.1 2.5 1
PMI_typeI Phosphomannose isomerase type I 3.1 6.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
pp-binding 1/1 131 154 .. 1 24 [. 7.1 2.5
PMI_typeI 1/1 267 301 .. 333 375 .. 3.1 6.4
Glycos_transf_1 1/1 188 368 .. 1 191 [] 91.7 2.7e-24
Alignments of top-scoring domains:
pp-binding: domain 1 of 1, from 131 to 154: score 7.1, E = 2.5
*->erlreiwaevLgvdpdeigiddnF<-*
++l+ i++e+L + d+i +++nF
T23F2.1 131 AKLIGIVEEELFGHIDQIFVNSNF 154
PMI_typeI: domain 1 of 1, from 267 to 301: score 3.1, E = 6.4
*->MLtYkydpsgeqkmqptefprSlldgvkSvLydPiPideFavl<-*
M+t+ ++p +++k+q+ ++ + Ly+P P + F+++
T23F2.1 267 MVTFIPSPTDKVKFQLYQ------QC-DTALYTP-PNEHFGIV 301
Glycos_transf_1: domain 1 of 1, from 188 to 368: score 91.7, E = 2.7e-24
*->dreeirkklgikedkkiilfvGRlvpeKGidllieAfkkLkkkpkll
+r+ r++ + ++++++l+ R++peK++d +ieA+++Lk+k
T23F2.1 188 ERPVSRAQRAK-NETYTFLSMNRFWPEKRLDIIIEAASILKQK---- 229
klnpnlkLvivGgpYds......edgeeedelkklaeklglednviflGf
++ +++ ++G s ++ +e+ +++ l+ + e+l++ d v+f+
T23F2.1 230 --GYHFHVQLAG----SvmphipESRIYYEVLQRMTEELNVTDMVTFIPS 273
vpdedlpelyksadvfvlPSryEgFGivllEAmAcGlPVIatncvgGipE
d+ ly+++d ++++ E+FGiv++EA+ +PVI+ + gG++E
T23F2.1 274 PTDKVKFQLYQQCDTALYTPPNEHFGIVPIEALDQRRPVIVCD-SGGPAE 322
vvkdgetGllvepgqdpealaeaiekllkdeekkdllelrkrlgenarkr
+v ++ tG ++ + e laea++ ++ +++ el + g + +++
T23F2.1 323 TVLEDITGTKIAKP-CGELLAEAMLHHMNKRDWP---ELDTDEGYAKQRH 368
<-*
T23F2.1 - -