Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T23F11.1
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Query: T23F11.1 CE24009 phosphatase status:Confirmed SW:P49596 protein_id:CAA86456.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PP2C Protein phosphatase 2C 336.6 2.8e-97 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PP2C 1/1 22 273 .. 1 301 [] 336.6 2.8e-97
Alignments of top-scoring domains:
PP2C: domain 1 of 1, from 22 to 273: score 336.6, E = 2.8e-97
*->ldvgvsrmqgwrksmeDahialknlnssssgkdswsffavfDGhgGs
+ vg+s+mqgwr meDah++l l ++ + +ffav+DGhgGs
T23F11.1 22 YLVGSSCMQGWRVDMEDAHTHLLSL----PDDPKCAFFAVYDGHGGS 64
qaakyagkhlhktilaerksfpegdpwEmklsdledalkesfleadtdee
++++y g +lh ++ +k+f eg + ++a+ ++fle +d+
T23F11.1 65 KVSQYSGINLH-KKVVAQKEFSEG--------NMKEAIEKGFLE--LDQQ 103
lrsaeasaankvltkedlssGsTAvvalirgnkLyVANvGDSRavLcrng
+r +++ +d+ sG+TAvv+li + y++N+GDSRav + g
T23F11.1 104 MRV---DEET-----KDDVSGTTAVVVLIKEGDVYCGNAGDSRAVSSVVG 145
naikwavtLteDHkPsnedEreRIeaaGGfvsrvsngRvnGvLavSRAfG
+a+ +L++DHkPs+e E++RI aaGG+v+ ++RvnG+La+SRA+G
T23F11.1 146 EAR----PLSFDHKPSHETEARRIIAAGGWVE---FNRVNGNLALSRALG 188
DfelKpgsklgpeesleanyeyikspeqlVtaePdvtsstdltpdkDeFl
Df +K ++++ ee q+Vta Pdv + +ltpd +eF+
T23F11.1 189 DFAFKNCDTKPAEE-------------QIVTAFPDVI-TDKLTPD-HEFI 223
iLAcDGLWDvvsdqevvdivrselsdgnksaedpmeaaeklvdeaiargs
+LAcDG+WDv+++qevvd+vr+ l +++ dp+ ++e+l++ ++a+ +
T23F11.1 224 VLACDGIWDVMTNQEVVDFVREKLAEKR----DPQSICEELLTRCLAPDC 269
eDni<-*
+
T23F11.1 270 QMGG 273