Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T22G5.1
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Query: T22G5.1 CE13982 status:Partially_confirmed TR:O02322 protein_id:CAB03386.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
GDPD Glycerophosphoryl diester phosphodiesterase 213.0 1.3e-62 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
GDPD 1/1 73 324 .. 1 315 [] 213.0 1.3e-62
Alignments of top-scoring domains:
GDPD: domain 1 of 1, from 73 to 324: score 213.0, E = 1.3e-62
*->HRGasgsaPlpENTllafrkAaeaGADgvElDVqlTKDGvpVvmHDe
HRG+ +++ pEN+l+af + + +G + E+D+q+T+DGvpV++HD+
T22G5.1 73 HRGSAHDNI-PENSLEAFSAVKSEGGQLAEMDIQITMDGVPVICHDS 118
tLdRttdgagsfesvgglrvkdlTleeLkkldltedlldllllhSvdstf
++ R+t++++ ++ ++ e++kl++
T22G5.1 119 NTVRVTGVDK--------EISAMNITEFRKLRF----------------- 143
eagsgrsrpfsgervplwsgKnrheeafpfpTLeevleeviqdvgfniei
+g + s+p+++e+v ++ ++ +++ i+dv++ e
T22G5.1 144 -IGTNVSLPTFEEAVA--------------HCVANNIMM-IWDVKNVDEN 177
kikiydeqieveevfeivkdlnasvddilkkgvlkkadprrvifssFdpd
++k+++ qi+ ++ ++ k+l+ ++++i+++ ++k+adp+++++ +++ +
T22G5.1 178 LLKQFVIQIRTYN--LYSKVLVSGFNPIDTY-LVKMADPKILTGFTWRSW 224
slkrlrelapprmelplvfLfv.rdealdpekDpRgslleraarfagapa
+l+ ++e+a + + + ++ ++++ld l + +ar++ +p
T22G5.1 225 ELSTTDEAAT---TPRFTGTLHaVASVLDV-------LAFGLARSLIIPK 264
llgeialvaeglgpwkmiIekdpdlvkraharG.lkVfvWTvnnedeeem
+lg+ ++++ ++++++k a++++ + +WT+nn+ e+
T22G5.1 265 FLGSDVIFYHVS--------DISRFLKTDAAANnIYLAGWTSNNQ--YEQ 304
yrllklGVDgviTDrpdllr<-*
++l+++ +++TD+++++
T22G5.1 305 VWLRDYLKVPFLTDNVGTVP 324