Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T21H8.1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: T21H8.1 CE24000 status:Partially_confirmed TR:Q94071 protein_id:CAB01771.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SAM SAM domain (Sterile alpha motif) 98.0 2.4e-26 3
SNAP-25 SNAP-25 family 8.4 0.56 1
bZIP bZIP transcription factor 7.3 1.4 1
DUF593 Protein of unknown function, DUF593 4.6 6.2 1
bZIP_Maf bZIP Maf transcription factor 3.6 7.6 1
FliD Flagellar hook-associated protein 2 1.6 7.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF593 1/1 223 241 .. 1 19 [. 4.6 6.2
bZIP_Maf 1/1 270 295 .. 147 172 .. 3.6 7.6
bZIP 1/1 266 298 .. 33 65 .] 7.3 1.4
FliD 1/1 284 319 .. 703 738 .] 1.6 7.4
SNAP-25 1/1 544 572 .. 1 32 [. 8.4 0.56
SAM 1/3 642 706 .. 1 68 [] 42.8 1.2e-10
SAM 2/3 714 777 .. 1 68 [] 49.4 1.7e-12
SAM 3/3 805 832 .. 1 28 [. 5.9 3.9
Alignments of top-scoring domains:
DUF593: domain 1 of 1, from 223 to 241: score 4.6, E = 6.2
*->velLretvseerkalqdLy<-*
v+ L e+v ++++ ++dL+
T21H8.1 223 VSVLSEQVGAQKEKIKDLE 241
bZIP_Maf: domain 1 of 1, from 270 to 295: score 3.6, E = 7.6
*->eLEkeKaqLaqQleqLkeEvsrlarE<-*
eLE++K+ L +++ Lk ++ l rE
T21H8.1 270 ELESKKMDLLAEVSSLKLRYATLERE 295
bZIP: domain 1 of 1, from 266 to 298: score 7.3, E = 1.4
*->ekveeLeaeNkaLrkelerLkkevakLksenee<-*
++++eLe++ ++L e+++Lk +a L+ e++e
T21H8.1 266 DECQELESKKMDLLAEVSSLKLRYATLEREKNE 298
FliD: domain 1 of 1, from 284 to 319: score 1.6, E = 7.4
*->sltkqvedlqrrieqlekRykkqFtamDtlmgkmne<-*
sl+ ++++l+r +++ek+++ ++mD +++m +
T21H8.1 284 SLKLRYATLEREKNETEKKLRLSQNEMDHVNQSMHG 319
SNAP-25: domain 1 of 1, from 544 to 572: score 8.4, E = 0.56
*->PwnKldepiktfksgedkkkawkaNdDekrea<-*
P++Kl +++ t+++ d++ a++ N++ +a
T21H8.1 544 PSKKLSVASGTSVVESDDEIARGRNLN---NA 572
SAM: domain 1 of 3, from 642 to 706: score 42.8, E = 1.2e-10
*->dnwsvesVgeWLesiglgqYkeyfdsfgynsidgvalltlteeDLkd
w e++++W+ +ig++q y+++ + + +g+++l++++++ +
T21H8.1 642 VDWRSEQLADWIAEIGYPQ---YMNEVSRHVRSGRHFLNMSMNEYEG 685
iGgvtllGHrkkIlssIqgLk<-*
+++++++ Hrk+ + ++++
T21H8.1 686 VLNIKNPVHRKRVAILLRRIE 706
SAM: domain 2 of 3, from 714 to 777: score 49.4, E = 1.7e-12
*->dnwsvesVgeWLesiglgqYkeyfdsfgynsidgvalltlteeDLkd
w+v + WL++igl+q y+d f +n +dg +ll+lt +D ++
T21H8.1 714 NKWDVHQTLRWLDDIGLPQ---YKDVFAENVVDGPLLLSLTANDAVE 757
iGgvtllGHrkkIlssIqgLk<-*
++v++++H +++sIq+Lk
T21H8.1 758 -MKVVNAHHYATLARSIQFLK 777
SAM: domain 3 of 3, from 805 to 832: score 5.9, E = 3.9
*->dnwsvesVgeWLesiglgqYkeyfdsfg<-*
w+++ +eWL+ i+l + +++++ +g
T21H8.1 805 VRWTHSATCEWLRKIDLAEFTQNLLFAG 832