Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T21C9.6
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Query: T21C9.6 CE06475 pyruvate, water dikinase status:Partially_confirmed TR:Q22649 protein_id:CAA97341.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PPDK_N_term Pyruvate phosphate dikinase, PEP/pyruva 390.9 1.3e-113 1
PEP-utilizers PEP-utilizing enzyme, mobile domain 106.7 1e-28 1
MobB Molybdopterin guanine dinucleotide synt 5.4 2.4 1
PNP_UDP_1 Phosphorylase family 3.2 5.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
MobB 1/1 392 429 .. 116 154 .] 5.4 2.4
PPDK_N_term 1/1 296 704 .. 1 416 [] 390.9 1.3e-113
PNP_UDP_1 1/1 1046 1068 .. 252 274 .] 3.2 5.4
PEP-utilizers 1/1 1120 1205 .. 1 103 [] 106.7 1e-28
Alignments of top-scoring domains:
MobB: domain 1 of 1, from 392 to 429: score 5.4, E = 2.4
*->pkIvvskkgeiskkvideidglivdiltevdeilkavvl<-*
p+Ivv + +++k+vi l +++l +++++++++++
T21C9.6 392 PGIVVTTA-AFNKHVIANPNVLEEIKLLDINDKNAEYYE 429
PPDK_N_term: domain 1 of 1, from 296 to 704: score 390.9, E = 1.3e-113
*->klvlwfeeggkndna...lmveLlGGKGanLgEMirnLelGlPVPpG
++++++e+++ +d++ +++ +++G G+ ++ + ++e++++ P++
T21C9.6 296 HFTFIREDNKVVDVTaleVNSAIFTGVGFVVRVREAIHEVTTKLPDS 342
FviTaeayryfleag...............qkg.....lpeglqdeilel
F+ ++++ + ++++ + +++ +++ +++kg + +l+++++d+++++
T21C9.6 343 FPEYHATESEKMKSVvsfnhracqdkmltgGKGanlarLQAITDDFHVPP 392
LsklevedgkklgidpenpLlvivrsiaatsMPgmmdti.K.lnLGLNDe
++++ ++k+ i+++n L++i+ +++++++ +++++++K+++++L+++
T21C9.6 393 GIVVTTAAFNKHVIANPNVLEEIKLLDINDKNAEYYEDVgKrIEGLLFES 442
ayngLaekyGk.mnerfAydAVRSSatMfGdVAEDlPdasFAGqqEtyLn
+++ +k++k++++r++y+AVRSSa + ED d s AGq+E+yL+
T21C9.6 443 EVSQELQKEIKeWLPRSEYYAVRSSAVG-----EDGADLSSAGQLESYLD 487
vkGadevldlvkeclaSLftdraiiYreaqGfdFhsdpylqlvvQkmvvf
v+++d ++d++k c++S+f++ + +Yr+++G++ +p++++v+Q+m+++
T21C9.6 488 VIEID-IVDKLKLCWGSNFRREVLNYRKNYGQQ--LNPSMAVVIQEMDRN 534
eSWksGvmftyrpvtgidgevligaAvglGEmVVGGlvtpDetgVfftrn
+Gvmft++pv+ ++ge++i+a g GE++V+G++tpDe++V++ ++
T21C9.6 535 G--VAGVMFTANPVKLDRGEIVINALKGSGEQIVSGVTTPDEIYVNRIHK 582
piTgekIlekliGivlDdyqseklkmaqgedgrwVvaGkrTpieivamae
+++++k + ++++lDdyq+ekl++++++ +r ++Gk+++ie+v
T21C9.6 583 TVVINK---VGVDCCLDDYQIEKLTKVGEYLER--IFGKPQDIEFVV--- 624
eskeqrekqalspeeykeLaeiakklEdHYgkkgYdpqDIEFtiedtgkL
q+++ ++s++ + + e+++++++ Y+++ +++D E+ ++ ++
T21C9.6 625 --RNQMVNIVQSRDITGLDKETQFEMCTEYNSP--SIHDKEILTN--ANV 668
yiLQaRpitrtsqaakevriavdmviegkinkkedklidkgeavs<-*
+ + p+++++ ++ ++ ++d vi + +++++ ++v+
T21C9.6 669 GEVLPVPVNAMEAHN--LTGMFDKVIAS-------MTFQELNDVV 704
PNP_UDP_1: domain 1 of 1, from 1046 to 1068: score 3.2, E = 5.4
*->evsfaeflqkafkdsakvvlemv<-*
+ s++e ++ ++ sak+v +++
T21C9.6 1046 HFSMDELKELNATRSAKLVSRAI 1068
PEP-utilizers: domain 1 of 1, from 1120 to 1205: score 106.7, E = 1e-28
*->aavGqakvvfiaeeaeaaefgegvILVaeettPsdtagmnkkyakGi
a+ a+v+++ ++ea+e ++g+IL++++t+ + + +++ ++Gi
T21C9.6 1120 AR---ARVAKT--LEEAKETKPGEILITKYTDICWSPFFPI--ISGI 1159
vTdrGGrTSHAAIvARelGIPaVvGtgnaVddakiligtevlkdGdiitv
vT++GG++SH A+vARe+G+P + ++na t+ +k+Gd++ +
T21C9.6 1160 VTEIGGLLSHGAVVAREYGLPSLIAVSNA---------TYHFKTGDLVEL 1200
CDGstG<-*
D ++G
T21C9.6 1201 -DSISG 1205