Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T21C9.6
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Query:  T21C9.6  CE06475   pyruvate, water dikinase status:Partially_confirmed TR:Q22649 protein_id:CAA97341.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
PPDK_N_term   Pyruvate phosphate dikinase, PEP/pyruva   390.9   1.3e-113   1
PEP-utilizers PEP-utilizing enzyme, mobile domain       106.7      1e-28   1
MobB          Molybdopterin guanine dinucleotide synt     5.4        2.4   1
PNP_UDP_1     Phosphorylase family                        3.2        5.4   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
MobB            1/1     392   429 ..   116   154 .]     5.4      2.4
PPDK_N_term     1/1     296   704 ..     1   416 []   390.9 1.3e-113
PNP_UDP_1       1/1    1046  1068 ..   252   274 .]     3.2      5.4
PEP-utilizers   1/1    1120  1205 ..     1   103 []   106.7    1e-28

Alignments of top-scoring domains:
MobB: domain 1 of 1, from 392 to 429: score 5.4, E = 2.4
                   *->pkIvvskkgeiskkvideidglivdiltevdeilkavvl<-*
                      p+Ivv +  +++k+vi     l +++l +++++++++++
     T21C9.6   392    PGIVVTTA-AFNKHVIANPNVLEEIKLLDINDKNAEYYE    429

PPDK_N_term: domain 1 of 1, from 296 to 704: score 390.9, E = 1.3e-113
                   *->klvlwfeeggkndna...lmveLlGGKGanLgEMirnLelGlPVPpG
                      ++++++e+++ +d++  +++  +++G G+ ++ +  ++e++++ P++
     T21C9.6   296    HFTFIREDNKVVDVTaleVNSAIFTGVGFVVRVREAIHEVTTKLPDS 342

                   FviTaeayryfleag...............qkg.....lpeglqdeilel
                   F+ ++++  + ++++ + +++  +++  +++kg +  +l+++++d+++++
     T21C9.6   343 FPEYHATESEKMKSVvsfnhracqdkmltgGKGanlarLQAITDDFHVPP 392

                   LsklevedgkklgidpenpLlvivrsiaatsMPgmmdti.K.lnLGLNDe
                      ++++ ++k+ i+++n L++i+ +++++++ +++++++K+++++L+++
     T21C9.6   393 GIVVTTAAFNKHVIANPNVLEEIKLLDINDKNAEYYEDVgKrIEGLLFES 442

                   ayngLaekyGk.mnerfAydAVRSSatMfGdVAEDlPdasFAGqqEtyLn
                    +++  +k++k++++r++y+AVRSSa +     ED  d s AGq+E+yL+
     T21C9.6   443 EVSQELQKEIKeWLPRSEYYAVRSSAVG-----EDGADLSSAGQLESYLD 487

                   vkGadevldlvkeclaSLftdraiiYreaqGfdFhsdpylqlvvQkmvvf
                   v+++d ++d++k c++S+f++ + +Yr+++G++   +p++++v+Q+m+++
     T21C9.6   488 VIEID-IVDKLKLCWGSNFRREVLNYRKNYGQQ--LNPSMAVVIQEMDRN 534

                   eSWksGvmftyrpvtgidgevligaAvglGEmVVGGlvtpDetgVfftrn
                       +Gvmft++pv+ ++ge++i+a  g GE++V+G++tpDe++V++ ++
     T21C9.6   535 G--VAGVMFTANPVKLDRGEIVINALKGSGEQIVSGVTTPDEIYVNRIHK 582

                   piTgekIlekliGivlDdyqseklkmaqgedgrwVvaGkrTpieivamae
                   +++++k   + ++++lDdyq+ekl++++++ +r  ++Gk+++ie+v
     T21C9.6   583 TVVINK---VGVDCCLDDYQIEKLTKVGEYLER--IFGKPQDIEFVV--- 624

                   eskeqrekqalspeeykeLaeiakklEdHYgkkgYdpqDIEFtiedtgkL
                       q+++ ++s++ +  + e+++++++ Y+++  +++D E+ ++   ++
     T21C9.6   625 --RNQMVNIVQSRDITGLDKETQFEMCTEYNSP--SIHDKEILTN--ANV 668

                   yiLQaRpitrtsqaakevriavdmviegkinkkedklidkgeavs<-*
                     + + p+++++ ++  ++ ++d vi +       +++++ ++v+
     T21C9.6   669 GEVLPVPVNAMEAHN--LTGMFDKVIAS-------MTFQELNDVV    704

PNP_UDP_1: domain 1 of 1, from 1046 to 1068: score 3.2, E = 5.4
                   *->evsfaeflqkafkdsakvvlemv<-*
                      + s++e ++  ++ sak+v +++
     T21C9.6  1046    HFSMDELKELNATRSAKLVSRAI    1068

PEP-utilizers: domain 1 of 1, from 1120 to 1205: score 106.7, E = 1e-28
                   *->aavGqakvvfiaeeaeaaefgegvILVaeettPsdtagmnkkyakGi
                      a+   a+v+++  ++ea+e ++g+IL++++t+  + + +++  ++Gi
     T21C9.6  1120    AR---ARVAKT--LEEAKETKPGEILITKYTDICWSPFFPI--ISGI 1159

                   vTdrGGrTSHAAIvARelGIPaVvGtgnaVddakiligtevlkdGdiitv
                   vT++GG++SH A+vARe+G+P +  ++na         t+ +k+Gd++ +
     T21C9.6  1160 VTEIGGLLSHGAVVAREYGLPSLIAVSNA---------TYHFKTGDLVEL 1200

                   CDGstG<-*
                    D ++G
     T21C9.6  1201 -DSISG    1205



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