Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T21C9.4
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: T21C9.4 CE06473 Enhancer of rudimentary status:Partially_confirmed SW:Q22640 protein_id:CAA97332.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ER Enhancer of rudimentary 278.5 1.4e-84 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ER 1/1 1 103 [] 1 103 [] 278.5 1.4e-84
Alignments of top-scoring domains:
ER: domain 1 of 1, from 1 to 103: score 278.5, E = 1.4e-84
*->msHTILLlQptknpetRTysDYesvnecmeGiCklYEekLKrknPnl
msHTILLlQpt+n+e+R++sDYe+++ec+eGiC++YEe+LK+k+P++
T21C9.4 1 MSHTILLLQPTDNIESRSWSDYENTTECLEGICRVYEEYLKKKVPAQ 47
peItYDISqLFdFiDdLaDLScLVYdkststYlPYnKqWIKekiYvlLrr
+eItYDIS+LF+FiDdL+DLS+LV+d++t+tY+P+nKq++Ke+iY+l+++
T21C9.4 48 NEITYDISHLFEFIDDLKDLSMLVLDNTTYTYVPHNKQYVKESIYKLMNN 97
ranngr<-*
r+nn++
T21C9.4 98 RLNNQH 103