hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T20F5.3
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Query:  T20F5.3  CE13820    status:Partially_confirmed SW:P91478 protein_id:AAB37664.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
RRF      Ribosome recycling factor                      212.2    7.7e-60   1
DUF21    Domain of unknown function DUF21                 3.2        9.3   1
NosD     Periplasmic copper-binding protein (NosD)        3.0        3.1   1
DAD      DAD family                                       2.0        9.7   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DAD        1/1      59    74 ..   119   134 .]     2.0      9.7
NosD       1/1     138   148 ..     1    11 [.     3.0      3.1
DUF21      1/1     316   359 ..   152   198 .]     3.2      9.3
RRF        1/1     201   365 ..     1   167 []   212.2  7.7e-60

Alignments of top-scoring domains:
DAD: domain 1 of 1, from 59 to 74: score 2.0, E = 9.7
                   *->ifanLiLHLVvvNFlG<-*
                      i+ +Li  LVv+NF +
     T20F5.3    59    ILPSLIYFLVVINFPN    74

NosD: domain 1 of 1, from 138 to 148: score 3.0, E = 3.1
                   *->VfiqkgAeRAv<-*
                      +++++gA+RA+
     T20F5.3   138    IRLAQGASRAQ    148

DUF21: domain 1 of 1, from 316 to 359: score 3.2, E = 9.3
                   *->llnlianillrlfgvkpkdehdfalteeeLrilvsesaeaGeldqdE
                      +++++ ++  ++f  +p+++   + t+e L  + ++++++G+l ++E
     T20F5.3   316    IYSKSDKKSSNEFSTRPDEA---KKTREALLNMKHAAEQRGGLLIEE 359

                   <-*

     T20F5.3     -     -

RRF: domain 1 of 1, from 201 to 365: score 212.2, E = 7.7e-60
                   *->alkeelstiRTGRanpslldkitVeyYsGapTPLsqlAsisvpeart
                      +l+eel+++++++++++++++++V+ ++G+++PLs++A+++ +++++
     T20F5.3   201    LLVEELTRHFSLKVDIRQYEDVMVKLENGKDKPLSMIARVTLKSPLM 247

                   ivIsPfDvksaikaIEkAIlnSdLGlnPnnDGsvIRvnlPpLTeERRkel
                   i+I+++D++saika + AI++S+L+++P+++G+v++vn+Pp+++ERR+++
     T20F5.3   248 IMINFQDNPSAIKAAKLAIQKSTLNVTPQQEGAVLYVNVPPMSKERREKM 297

                   vKdaKkiaEeaKvavRNiRRdandeikkleKdkeisEDevkkaeedlQKl
                   + daK+++ +++++++N++++++d+++++e++  +++De+kk++e+l ++
     T20F5.3   298 ASDAKGRILNEYKKAINEIYSKSDKKSSNEFS--TRPDEAKKTREALLNM 345

                   tDkyikkidellkdKEKelm<-*
                   +++++++ + l+++++K+l+
     T20F5.3   346 KHAAEQRGGLLIEERRKQLL    365

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