Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T19F4.1a
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Query: T19F4.1a CE29348 status:Partially_confirmed TR:Q95QA0 protein_id:AAL02524.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
7tm_1 7 transmembrane receptor (rhodopsin family) 35.0 9.9e-11 2
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
7tm_1 1/2 95 134 .. 71 111 .. 21.6 2.1e-06
7tm_1 2/2 172 239 .. 158 224 .. 19.6 9.2e-06
Alignments of top-scoring domains:
7tm_1: domain 1 of 2, from 95 to 134: score 21.6, E = 2.1e-06
*->yaSillLtaISiDRYlAIvhPlryrrrrtsprrAkvvillv<-*
++S++ +++I+++R++A+++Pl+ r+++t pr+ + il++
T19F4.1a 95 TCSVYIMVMITLERWVAVCRPLQVRVWCT-PRKSRNAILVI 134
7tm_1: domain 2 of 2, from 172 to 239: score 19.6, E = 9.2e-06
*->stwlvsyvllstlvgFllPllvilvcYtrIlrtlrkrarkgas.kkr
+++ +y++l ++ Fl+P++v+++++++++ +++k + + +++
T19F4.1a 172 WYYVGYYTILYIVTHFLVPFSVMAFANGHVIVAMCKLSKTRQMlTRQ 218
sskerkaaktllvvvvvFvlC<-*
+++e+ ++ +ll+v +vF++C
T19F4.1a 219 QQREQSTTVMLLIVTFVFAIC 239