Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T19A6.2b
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Query: T19A6.2b CE20084 AUTOANTIGEN NGP-1 status:Partially_confirmed TR:Q9U365 protein_id:CAA16514.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
MMR_HSR1 GTPase of unknown function 315.3 7.3e-91 1
FeoB Ferrous iron transport protein B 11.0 0.013 1
Trp_repressor Trp repressor protein 6.7 1.7 1
GTP1_OBG GTP1/OBG family 5.5 1.8 1
TSC22 TSC-22/dip/bun family 4.8 2.4 1
PARG Poly (ADP-ribose) glycohydrolase (PARG) 2.5 4.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TSC22 1/1 46 58 .. 44 56 .. 4.8 2.4
PARG 1/1 99 111 .. 408 420 .] 2.5 4.8
Trp_repressor 1/1 181 200 .. 30 49 .. 6.7 1.7
FeoB 1/1 271 286 .. 1 16 [. 11.0 0.013
GTP1_OBG 1/1 269 290 .. 151 172 .. 5.5 1.8
MMR_HSR1 1/1 162 418 .. 1 304 [] 315.3 7.3e-91
Alignments of top-scoring domains:
TSC22: domain 1 of 1, from 46 to 58: score 4.8, E = 2.4
*->vSpEqLaqlqaql<-*
+ +EqL+++qa+l
T19A6.2b 46 IGQEQLQKFQANL 58
PARG: domain 1 of 1, from 99 to 111: score 2.5, E = 4.8
*->yTFGdeELrndcq<-*
yTFG Lr++ +
T19A6.2b 99 YTFGKKSLRKKAK 111
Trp_repressor: domain 1 of 1, from 181 to 200: score 6.7, E = 1.7
*->DEReAlGtRvrIveeLlrge<-*
D R+ +GtR r vee lr+e
T19A6.2b 181 DARDPMGTRCRHVEEFLRKE 200
FeoB: domain 1 of 1, from 271 to 286: score 11.0, E = 0.013
*->LvGNPNVGKSTLFNAL<-*
++G PNVGKS+L N L
T19A6.2b 271 FIGYPNVGKSSLVNTL 286
GTP1_OBG: domain 1 of 1, from 269 to 290: score 5.5, E = 1.8
*->VglvglPnagkStliraiseak<-*
Vg++g+Pn+gkS+l+ +++++k
T19A6.2b 269 VGFIGYPNVGKSSLVNTLRKKK 290
MMR_HSR1: domain 1 of 1, from 162 to 418: score 315.3, E = 7.3e-91
*->alkqvkkvieeaDvileVvDARdPlssrnpelekyvkkkpk.KklIL
++ ++ kvi+++Dv+++VvDARdP+++r++++e++++k++++K+l+
T19A6.2b 162 VWGELYKVIDSSDVVVQVVDARDPMGTRCRHVEEFLRKEKPhKHLVT 208
VlNKaDlapkseevveewkkygekegptisakhasggllkkdvskalqpe
V+NK+Dl+p+ +v+ +w+ + ke+pti ++++++ +++
T19A6.2b 209 VINKVDLVPT--WVTRKWIGELSKEMPTI-----------AFHASINNSF 245
eqgleeaiallesLkeegdkpeievqPgpqpkkksirVgviGyPNVGKSS
++g a++ +L++++++++++ +i Vg+iGyPNVGKSS
T19A6.2b 246 GKG-----AVINLLRQFAKLHPDR---------PQISVGFIGYPNVGKSS 281
LINaLvgkkrkskpaiVsnrPGtTrdiqeiklkhkdkkieLiDTPGirfp
L N+L++kk+ +++++++G T+ +q++ l + +i+LiD+PG++ p
T19A6.2b 282 LVNTLRKKKV----CKTAPIAGETKVWQYVML---MRRIYLIDSPGVVYP 324
ssvdesvgkdelkLaltgvirtekviepadavlllidllekysdeqdeki
+ + e + l+gv+r+e+v +p++ v ++d++++ e + +
T19A6.2b 325 QGDSE------TQIILKGVVRVENVKDPENHVQGVLDRCKP---EHLRRQ 365
aglieipreeededellviiaknrgdLlkkggepdlnraakivlkdfrtG
+g+ e +d d++l +ia++ g+Llk gg pd++ ++k vl++f++G
T19A6.2b 366 YGIPE----FTDVDDFLTKIAIKQGRLLK-GGDPDIVAVSKVVLNEFQRG 410
klgwvtlp<-*
kl+++++p
T19A6.2b 411 KLPYFVPP 418