Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T13H5.3
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: T13H5.3 CE03654 chitinase-like repeats status:Partially_confirmed TR:Q22468 protein_id:CAA91419.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Glyco_hydro_18 Glycosyl hydrolases family 18 400.4 1.7e-116 1
Chitin_bind_1 Chitin recognition protein 7.5 1 3
VPR VPR/VPX protein 4.5 6 1
SAA_proteins Serum amyloid A protein 3.9 2.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
VPR 1/1 88 108 .. 33 53 .. 4.5 6
SAA_proteins 1/1 284 301 .. 1 18 [. 3.9 2.9
Glyco_hydro_18 1/1 39 383 .. 1 392 [] 400.4 1.7e-116
Chitin_bind_1 1/3 450 473 .. 14 36 .. 8.3 0.61
Chitin_bind_1 2/3 528 551 .. 14 36 .. 7.4 1.1
Chitin_bind_1 3/3 599 622 .. 14 36 .. 7.8 0.86
Alignments of top-scoring domains:
VPR: domain 1 of 1, from 88 to 108: score 4.5, E = 6
*->leEikeEAvkHFpreLLfavg<-*
le ke A +H +++LL+avg
T13H5.3 88 LEHVKEVASRHPDLKLLYAVG 108
SAA_proteins: domain 1 of 1, from 284 to 301: score 3.9, E = 2.9
*->swlsFlkEAaqGawDMwR<-*
++ + +++A++ + DMwR
T13H5.3 284 RFWKNVGDAVDSTDDMWR 301
Glyco_hydro_18: domain 1 of 1, from 39 to 383: score 400.4, E = 1.7e-116
*->krivgYftqwgnygrgrleGakflvddidpsgkaAdklTHinyaFan
+r vgY t+wg ++ dd + klTH+++aF+
T13H5.3 39 RRRVGYITSWGKHPFR---------DDQA------EKLTHLVFAFFV 70
idgngtv.tnddp.kgcfeqlkklKkqnpglKvllSiGGwtfsgdfanva
+d++g+v+ + d+ k + e +k++ +++p+lK l ++GGw +s
T13H5.3 71 VDSDGSVkLEGDAaKARLEHVKEVASRHPDLKLLYAVGGWENSQ------ 114
gfs.lasdpakRktFidSivdflrkygLgRPlgDAvfDGiDiDWEyPggk
+fs l++d +R+ +i + v+++++yg fDG+DiDWEyP+ +
T13H5.3 115 YFSvLTADHSRRSILISNFVKVIKEYG---------FDGVDIDWEYPVTG 155
prkwgangglaspddvnedkdnytlLlkeLrealdkeakkdtGkkkgylL
ga g++ + d+ ny+ L++eLr +l ++++++ Gk yl+
T13H5.3 156 ----GAVEGTP----A--DRRNYVNLMRELRNELRDLESET-GK--SYLI 192
taAvpagpdpdgkidggYdiaeiskylDfiNvmtYDfhGpqaWdnqwg.v
+ A +ag + ++ gYd+++++ky+Df+Nvm+YD++G aW+++wg +
T13H5.3 193 SFAGAAGHW---VLKPGYDLQQLMKYCDFVNVMSYDYFG--AWASKWGaY 237
tGhnapLydgswdpevtygthdsgrrkkfNvdyavqyylckgvphasKlv
tG++apL + ++ +++ +Nv+++++ y c+ +K++
T13H5.3 238 TGPPAPLQFAMPKK----------FSGRMNVHATMKDYSCQIKA-TDKIN 276
lGiPfYGrgwtlvngsgngl.apa.......pgpgtkegGvlsykeical
+G+PfYGr w++v+++ ++ ++++++ + +++ + egG + ++++ ++
T13H5.3 277 MGVPFYGRFWKNVGDAVDSTdDMWrtatatnSEGTKFEGGDVQWRDLHEK 326
lgatvvydde.akapyiyngstgkqfvsyddprSikaKakYvkdkgLGGv
+t++ + ++k+p+i+ ++ k+fv+y++++S+k+K++Y+ ++++GGv
T13H5.3 327 FDTTKTKFHSgSKTPFIWLSEQ-KTFVGYENAESLKHKVDYIVENNIGGV 375
miWsldaD<-*
miW++d+D
T13H5.3 376 MIWAIDFD 383
Chitin_bind_1: domain 1 of 3, from 450 to 473: score 8.3, E = 0.61
*->pnnlCCSqfGyCGstedYCgk.gC<-*
p+ CC ++GyCGs++++C+ ++C
T13H5.3 450 PGHACCGKYGYCGSGAEFCSCpEC 473
Chitin_bind_1: domain 2 of 3, from 528 to 551: score 7.4, E = 1.1
*->pnnlCCSqfGyCGstedYCgk.gC<-*
+n CCS+ GyCG++++ C +gC
T13H5.3 528 ANAHCCSNGGYCGNSKEHCECnGC 551
Chitin_bind_1: domain 3 of 3, from 599 to 622: score 7.8, E = 0.86
*->pnnlCCSqfGyCGstedYCgk.gC<-*
++ +CCS+ GyCG++e+YC+ gC
T13H5.3 599 SESYCCSNSGYCGKGEQYCSClGC 622