Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T10H4.12
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  T10H4.12  CE27590  locus:cpr-3 cathepsin protease status:Confirmed SW:P43507 protein_id:CAB61032.2

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N
--------     -----------                                -----    ------- ---
Peptidase_C1 Papain family cysteine protease            341.0   1.9e-101   1
Pept_C1-like Peptidase C1-like family                     0.9        8.2   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
Pept_C1-like   1/1     300   317 ..   397   415 ..     0.9      8.2
Peptidase_C1   1/1      92   335 ..     1   337 []   341.0 1.9e-101

Alignments of top-scoring domains:
Pept_C1-like: domain 1 of 1, from 300 to 317: score 0.9, E = 8.2
                   *->WkVENStWGedsGeKGYfv<-*
                      W + NS WG + GeKG+f+
    T10H4.12   300    WLIANS-WGTSFGEKGFFK    317

Peptidase_C1: domain 1 of 1, from 92 to 335: score 341.0, E = 1.9e-101
                   *->lPesfDWRe.Wkgga.VtpVKdQGiqCGSCWAFSavgalEgrycikt
                      lP++fD+Re+W+ ++++  +++Q+  CGSCWAF+a++++++r ci++
    T10H4.12    92    LPDTFDAREkWPDCNtIKLIRNQA-TCGSCWAFGAAEVISDRVCIQS 137

                   gtkawggklvsLSEQqLvDCdgedygnngesCGyGCnGGGlmdnAfeYik
                   +    g ++  +S  ++++C+g        +CGyGC+G G+ + A++++
    T10H4.12   138 N----GTQQPVISVEDILSCCGT-------TCGYGCKG-GYSIEALRFWA 175

                   keqIsnNgGlvtEsdYe.kgCkPYtdf.PCgkdggndtyypCpgkaydpn
                           G vt++dY+++gC PY+ f PC k+        Cp+++
    T10H4.12   176 S------SGAVTGGDYGgHGCMPYS-FaPCTKN--------CPESTT--- 207

                   dTgtCkynckknskypktyakikgygdvpynvsT.ydEealqkalaknGP
                     ++Ck++c+++ + + +y k+k+yg  +y v T+++++++q +++++GP
    T10H4.12   208 --PSCKTTCQSS-YKTEEYKKDKHYGASAYKVTTtKSVTEIQTEIYHYGP 254

                   vsVaidasedskgDFqlYksGendvgyGvYkhtsageCggtpfteLdHAV
                   v+++  ++e    DF++YksG       vY+ t  g+  g      +HAV
    T10H4.12   255 VEASYKVYE----DFYHYKSG-------VYHYT-SGKLVG------GHAV 286

                   liVGYGteneggtfdetssskksesgiqvssgsngssgSSgssgapiedk
                   +i+G+G+en g
    T10H4.12   287 KIIGWGVEN-G--------------------------------------- 296

                   gkdYWIVKNSWGtdWGEnGYfriaRgknksgkneCGIaseasypi<-*
                    +dYW+++NSWGt+ GE+G+f+i+Rg+n     eC I+ +++++i
    T10H4.12   297 -VDYWLIANSWGTSFGEKGFFKIRRGTN-----ECQIEGNVVAGI    335



[DB home][top]