hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T10E10.2
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Query:  T10E10.2  CE23969   collagen status:Confirmed TR:Q22379 protein_id:AAA80358.2

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
Collagen      Collagen triple helix repeat (20 copies   104.6    1.9e-27   3
Col_cuticle_N Nematode cuticle collagen N-terminal do    56.6    2.1e-15   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Col_cuticle_N   1/1      25    88 ..     1    66 []    56.6  2.1e-15
Collagen        1/3     113   150 ..    23    60 .]    16.9   0.0036
Collagen        2/3     160   219 ..     1    60 []    56.3  5.6e-14
Collagen        3/3     227   286 ..     1    60 []    47.1  1.8e-11

Alignments of top-scoring domains:
Col_cuticle_N: domain 1 of 1, from 25 to 88: score 56.6, E = 2.1e-15
                   *->SgvAvlacLftvpsiyndInsfqdevmdemdeFKvyaddaWneMvdv
                      S  A l+c++++p++yn+++++q+ ++ e+d+++ ++ ++W+e++ +
    T10E10.2    25    SFTATLVCVIAAPMLYNYMQHMQSVMQSEVDFCRSRSGNIWREVTRT 71

                   qrnvrppskpasarfgrpf<-*
                   q+ +  +    + r +r+
    T10E10.2    72 QVLAKVS--GGALRSRRQA    88

Collagen: domain 1 of 3, from 113 to 150: score 16.9, E = 0.0036
                   *->paGapGppGppGepGpPGppGppGppGppGapGapGpp<-*
                      +aG+pG pG  Ge+G++G+pG+pG  Gp+G++  p p+
    T10E10.2   113    AAGPPGAPGQDGEDGADGQPGAPGNDGPDGPAATPAPA    150

Collagen: domain 2 of 3, from 160 to 219: score 56.3, E = 5.6e-14
                   *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
                      GppGp+Gp+Gp Gp G++G  G++GapG++G++G pG+PG++G++G
    T10E10.2   160    GPPGPAGPAGPKGPNGNSGSDGQPGAPGNNGNAGGPGAPGQAGQDGH 206

                   pGppGapGapGpp<-*
                   pG++GapGapG++
    T10E10.2   207 PGNAGAPGAPGKV    219

Collagen: domain 3 of 3, from 227 to 286: score 47.1, E = 1.8e-11
                   *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
                      G+pG pGp Gp+Gp+G pG+pG++G++Gp+Gp+G++G  G+pG+pG+
    T10E10.2   227    GAPGAPGPDGPAGPAGSPGAPGNPGSQGPQGPAGDNGGAGSPGQPGA 273

                   pGppGapGapGpp<-*
                    G  Ga+G+ G+p
    T10E10.2   274 NGDNGADGETGAP    286

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