Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T10B5.7
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Query:  T10B5.7  CE18237   lipase status:Confirmed TR:O76409 protein_id:AAC19230.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
Lipase_3 Lipase (class 3)                               204.2    2.1e-60   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Lipase_3   1/1      91   234 ..     1   175 []   204.2  2.1e-60

Alignments of top-scoring domains:
Lipase_3: domain 1 of 1, from 91 to 234: score 204.2, E = 2.1e-60
                   *->rrdIvvafRGTltllellddlliflttdvtpfefdgninveddqddp
                       ++I++afRGT + l+ll + +      +++++
     T10B5.7    91    DKAIIIAFRGTKGVLQLLVESDEI---MYRNKTA------------- 121

                   vvkvhggfvdlyfhrgflslrdqvleevlrllekykkedypdykivvTGH
                     +  gg v+ yf r+++ l++ +++e++++ +k++   yp+y+i+v GH
     T10B5.7   122 --WFGGGNVGFYFARSYNLLWNAGMKEDFNT-LKHA---YPGYEIWVGGH 165

                   SLGGAlAsLaAadlvanglnngplqrdssrvtvvtfGsPRvGnkkgeFak
                   SLGG++A+La+ +lvangl       +ss+++++tfG+PR+G+k  +Fa+
     T10B5.7   166 SLGGSMAALASNYLVANGL------ATSSNLKMITFGEPRTGDK--AFAD 207

                   avdelvpvksyRvvnrrDiVPrlPpalf<-*
                   a+d++v  +syR+v++ DiVP++P+  +
     T10B5.7   208 AHDKMVT-YSYRIVHHKDIVPHIPLNGM    234



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