Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T07C4.6
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Query: T07C4.6 CE00636 locus:tbx-9 Brachyury status:Partially_confirmed SW:Q22289 protein_id:CAA82575.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
T-box T-box 371.8 7.2e-108 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
T-box 1/1 92 280 .. 1 212 [] 371.8 7.2e-108
Alignments of top-scoring domains:
T-box: domain 1 of 1, from 92 to 280: score 371.8, E = 7.2e-108
*->kvsLedreLWkkFhelgtEMIVTKsGRRMFPtlkykVsGLdPnalYs
+++ + LWk Fh+ +EMIVTK+GR++FP+l+y V+GLd n+lY+
T07C4.6 92 SIEGSQETLWKIFHAEVNEMIVTKNGRKLFPKLEYIVEGLDENKLYA 138
vlldfvpvDdkRYKYnfnngkWvvaGKaEphppdsrvyvHPDSdldvpal
++l+++pv ++R+K f++gkW ++GKaE+++ ++++H+D+ ++
T07C4.6 139 IMLQLQPVGESRFK--FSGGKWQETGKAEKQVD-AKKMWHADG----VR- 180
simidetGahWMkqpVSFdklKLTNiqyKsnesledknghmIiviLnSMH
+G++WM++ ++Fd++K++N e++n++mI +LnSMH
T07C4.6 181 ------KGSDWMWSSICFDRVKISN-----YS--ESNNASMI--YLNSMH 215
KYqPrlhiVevddssslsp.qplsertvatfsFpeTqFIAVTAYQNqeiT
KY+P+l+i+e++++s+++++q+ s+++vat++Fp+T+FIAVTAYQNq+iT
T07C4.6 216 KYIPVLTIYESPSESPFCVpQS-SNQIVATAKFPHTEFIAVTAYQNQKIT 264
kLKIdnNPFAKGFRda<-*
LKI++N+FAKGFRd
T07C4.6 265 DLKIKHNSFAKGFRDG 280