Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T07A9.10
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Query:  T07A9.10  CE17219   acetylcholine regulator status:Confirmed TR:O44412 protein_id:AAK39282.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
Sec1     Sec1 family                                    286.6    3.2e-82   1
UPF0180  Uncharacterised protein family (UPF0180)         7.7       0.88   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
UPF0180    1/1     191   201 ..    75    85 .]     7.7     0.88
Sec1       1/1      31   558 ..     1   683 []   286.6  3.2e-82

Alignments of top-scoring domains:
UPF0180: domain 1 of 1, from 191 to 201: score 7.7, E = 0.88
                   *->EVcneveqrlr<-*
                      E+c+ veq+l+
    T07A9.10   191    EICQRVEQKLK    201

Sec1: domain 1 of 1, from 31 to 558: score 286.6, E = 3.2e-82
                   *->ewKVLvlDeettpilSscltvsdLleTPVegItlverienkRepEpl
                         VLvlD++ + +++scl+ +++ e   eg+tlve++  +Re  p+
    T07A9.10    31    ---VLVLDKSAMVVVNSCLSLNEVFE---EGVTLVEDLTRNRE--PM 69

                   pdvkAiyFvsrPteenidrLiqdlrsearkpk....YseyhifFtRWnvi
                   p++ Aiy +s P+ e+id+Li+d+ s ++k +++++Y+++hifF   +++
    T07A9.10    70 PSMDAIYIIS-PVAESIDILINDF-SRKTKFNpgnsYRSAHIFFL--DPC 115

                   skslledLaeadvaggaveavksvkEiyldFiplesDLFSLdspdenlla
                    ++l+e+L ++ + +  +  +k++kE +l++ p+es+ F+ +s+
    T07A9.10   116 CDELFEKLSKSPAVK--W--IKTLKELNLNLKPVESQIFTVNSQF----- 156

                   frllyspgtNmYYPNRltaeedealleriadgLftLcatlgeiPisIRyk
                        +++                 ++++adg+++Lcatl++ P+  R +
    T07A9.10   157 -----RGD-----------------MTKTADGIVSLCATLNIHPT-LRFQ 183

                   ggseraaeklAkkveqklrenlkadenslfegrrvgtGtfsktrpqLLIL
                   ++++ + +++ ++veqkl e         f +++      ++t   L+ L
    T07A9.10   184 SDFA-QSSEICQRVEQKLKE---------FGNEG------MGTDAELVVL 217

                   DRnvDpiTPLLhqlTYQAmvhDllgIennrVklekeskenktpGigekrk
                   DR++D+++PLLh++T QAmv D+  ++ ++++++       + G++
    T07A9.10   218 DRSFDLVSPLLHEVTLQAMVVDVTAFKDGVYRYT-------EAGDS---- 256

                   pdkevdLdekanDefWvelrhlnFaeVgeevkkllkefqekkdeikkkks
                     ke++Lde   D  W +lrh+  +eV + v+k +k+f++   ++  + +
    T07A9.10   257 --KEIVLDE--KDQNWLDLRHKLLPEVMKSVNKMVKDFKNTN-KTEPENI 301

                   siGlsGedeaAnslltddtadlkqfVkklPqlqkekglistHtslaeeil
                   ++              +  +d + +V  l  ++k+k++ +  +sl ee+
    T07A9.10   302 KN--------------QSSKDFSTTVRTLQPYLKMKAKMAAYISLTEECR 337

                   kvvkkrYnldkllevEQdLasgtdaeGEKiK.dklndiiel..Lidkavs
                   +++    +l+k++ +EQd a  ++ e   ++ ++ + + +l+++i +a++
    T07A9.10   338 SKYFD--SLEKIIALEQDMAVEHTPE--HVRiTDSQAVGRLstFILPAIP 383

                   ledkLRLilLYsLcknglsPenkvenl.lkllqhqgygpealktvsnLkk
                    e+ LRLil+  L+ +  +    +e++ ++ll h +++++  +++++++
    T07A9.10   384 TETRLRLILIFMLTIGKDK----DEQYfNRLLHHTDIPESEFQIIKRML- 428

                   lGllssktggddllitesksskkqseptYIQWFgkktisettrqlsgwvp
                       ++kt            +k q +++      +   + +++ +s+w p
    T07A9.10   429 --IWRDKT------------QKSQFQHR------RPPPEDERFIASRWDP 458

                   fimdgvenlypqhhlfhnldLkssrdpailspearvnldsplipqllgrs
                    i++ +e +y+++                        ld+++++ + g
    T07A9.10   459 KIKNLIEEIYERR------------------------LDEREFK-VAGKK 483

                   sknkltedvyaligpkhkrkapsktrvqkkrrsgelHAqdiIVFvvGGvT
                   s    + + +a++g+ ++ k+  k              ++iI+FvvGG+T
    T07A9.10   484 STSDFRPAASARYGSGLAGKPREK--------------RKIIIFVVGGIT 519

                   ysEaralrelnkakkgkgigkrviiggTailNpkkfLdeiselg<-*
                   ysE+r ++el+k++++      vi+g+++il+p++fL+++++ +
    T07A9.10   520 YSEMRVAYELSKKTNT-----TVILGSDEILTPSSFLESLRDRN    558



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