Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T06D8.3
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Query: T06D8.3 CE02324 status:Partially_confirmed TR:Q22250 protein_id:CAA88966.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PAP2 PAP2 superfamily 110.9 2.5e-30 1
PMT Dolichyl-phosphate-mannose-protein mannosylt 4.3 4.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PMT 1/1 27 64 .. 232 267 .] 4.3 4.9
PAP2 1/1 145 301 .. 1 174 [] 110.9 2.5e-30
Alignments of top-scoring domains:
PMT: domain 1 of 1, from 27 to 64: score 4.3, E = 4.9
*->sr.vtivkhlfarlliLill.Pvllyllffyvhfflyf<-*
+r++++++++ +++ +L++++ +l+ l++y+ f + f
T06D8.3 27 PRpRSYINYFIFPSAVLHVVgIACLAALWYYLRFTSVF 64
PAP2: domain 1 of 1, from 145 to 301: score 110.9, E = 2.5e-30
*->taigvlllalllagllllllknaigrlrplflalclpllalllncsd
+++ ++l +ll+++++++ +k+++g++rp+fl lc + + ++++
T06D8.3 145 RFVIIYLAGLLIVQIFVDTIKLMTGYQRPYFLSLCNVSITACTA--- 188
ggllkelfnrprPfthqfddsll.stlelvheggySFPSGHssfaaaaag
+l + p P++h + + + + +++ +++ FPS+H+ ++ +aa
T06D8.3 189 -----PLEHSPSPSPHLA---CNyRGADELRYAWLTFPSLHAVVSSYAAC 230
alalllalrlrwrkSseSqlflsllrpllgllllllallvglSRvylgvH
+ +l+++++++ r +++llrpll++ +++l ++ ++SR+ ++
T06D8.3 231 FASLYIYYMINLR-------GAPLLRPLLIFGFMGLCIVDSFSRINGYKN 273
ypsDVlaGallGilvallvlllvrrlrd<-*
++ D+++ +++Gi++a+++++ v +++
T06D8.3 274 HWRDIWVAWVIGIFMAWFLCYCVLCFQE 301