Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T05H4.14
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Query:  T05H4.14  CE13295    status:Partially_confirmed TR:O16519 protein_id:AAB66019.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
WD40     WD domain, G-beta repeat                       128.1    1.2e-34   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/6     113   151 ..     1    39 []    19.1   0.0012
WD40       2/6     160   198 ..     1    39 []    16.3   0.0076
WD40       3/6     214   253 ..     1    39 []    37.0    1e-08
WD40       4/6     286   308 ..    16    39 .]    19.6  0.00091
WD40       5/6     315   353 ..     1    39 []    28.9    2e-06
WD40       6/6     408   446 ..     1    39 []     7.2      3.1

Alignments of top-scoring domains:
WD40: domain 1 of 6, from 113 to 151: score 19.1, E = 0.0012
                   *->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
                        c a +++ t +++++++ p+ g ++asg+ D  +kl+d
    T05H4.14   113    AACEAKIsHGTQAISALRVEPP-GVRFASGGLDYYVKLFD    151

WD40: domain 2 of 6, from 160 to 198: score 16.3, E = 0.0076
                   *->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
                      +  +  l++ ++ ++++afsp+ g++l+ +S    i+l d
    T05H4.14   160    RYDKELLpAESHVINSLAFSPN-GETLVVASGEAIIRLLD    198

WD40: domain 3 of 6, from 214 to 253: score 37.0, E = 1e-08
                   *->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
                         l + +gHt++v+cv f+p + + ++s+S+Dg+++lW+
    T05H4.14   214    IIDLNITkGHTATVNCVEFNPLNKNEFISCSDDGSLRLWN    253

WD40: domain 4 of 6, from 286 to 308: score 19.6, E = 0.00091
                   *->vafspdsgpylasgSrDgtiklWd<-*
                      + fspd g+++a g++Dg++  W+
    T05H4.14   286    CTFSPD-GKWIAAGCDDGSVQAWK    308

WD40: domain 5 of 6, from 315 to 353: score 28.9, E = 2e-06
                   *->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
                           + ++H++++t++afspd +++l+s + D t+k+W+
    T05H4.14   315    NVNYLVRkAHNGSITSIAFSPD-SKRLLSRGFDDTLKMWS    353

WD40: domain 6 of 6, from 408 to 446: score 7.2, E = 3.1
                   *->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
                       ++++ ++    ++  + ++p   ++++ g +Dgti+++
    T05H4.14   408    FDLVYKIdYPGISCHRIQWHPR-LNQIIAGLSDGTIHVYY    446



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