Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T05E11.1
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Query: T05E11.1 CE06360 locus:rps-5 40S ribosomal protein S5 status:Confirmed SW:P49041 protein_id:CAA92971.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Ribosomal_S7 Ribosomal protein S7p/S5e 235.8 6.8e-82 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Ribosomal_S7 1/1 57 210 .] 1 158 [. 235.8 6.8e-82
Alignments of top-scoring domains:
Ribosomal_S7: domain 1 of 1, from 57 to 210: score 235.8, E = 6.8e-82
*->msRrrvakkrfikpdpiynsrLvnkliNkimklSdGKKslArrIvYk
+s++r + +rf k+ +++++rL+n l++++++ +GKK + rIv++
T05E11.1 57 HSAGRFQVRRFRKAACPIVERLANSLMMHGRN--NGKKLMTVRIVKH 101
AfeiiaertggedPlqVlvqAieNvkPrvEVrsrRvGGGttyqVPveVrp
Afeii +t ge+P qVlv+A+ N++Pr++ ++++++ Gt+++++v+V+p
T05E11.1 102 AFEIIYLLT-GENPVQVLVNAVINSGPREDSTRIGRA-GTVRRQAVDVAP 149
dRrlaLAlRWlieaArkRaekKkismaekLAnElidAanntGkSaAiKKk
+Rr+++A++ l+ +Ar++a+++ +++ae+LA+Eli+Aa++ +S+AiKKk
T05E11.1 150 LRRVNQAIWLLCTGAREAAFRNVKTIAECLADELINAAKGSSNSYAIKKK 199
EEiHrmAeANk<-*
+E++r+A++N+
T05E11.1 200 DELERVAKSNR 210