Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T05D4.5
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Query: T05D4.5 CE16345 status:Partially_confirmed TR:O45751 protein_id:CAB03295.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
MSP_domain MSP (Major sperm protein) domain 94.9 1.5e-26 1
Thymidylate_kin Thymidylate kinase 4.3 1.2 1
ERF ERF superfamily 3.7 6.4 1
OEP Outer membrane efflux protein 3.0 9.3 1
NAPRTase Nicotinate phosphoribosyltransferase 2.1 6.3 1
VacA Vacuolating cyotoxin 0.0 3.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
NAPRTase 1/1 59 92 .. 477 513 .] 2.1 6.3
OEP 1/1 64 100 .. 181 217 .] 3.0 9.3
MSP_domain 1/1 120 244 .. 1 138 [] 94.9 1.5e-26
VacA 1/1 263 282 .. 983 1002 .] 0.0 3.7
Thymidylate_kin 1/1 351 372 .. 177 197 .] 4.3 1.2
ERF 1/1 361 385 .. 1 34 [. 3.7 6.4
Alignments of top-scoring domains:
NAPRTase: domain 1 of 1, from 59 to 92: score 2.1, E = 6.3
*->LsLvktdsgqfvtevegcgDpddffldlLktvFelge<-*
L+L+k d + v+ ++ D + ++ L t +++g+
T05D4.5 59 LKLLKSDERARVIDARAVLDSA---QKHLATLLKNGG 92
OEP: domain 1 of 1, from 64 to 100: score 3.0, E = 9.3
*->ysAraeladakydleqalaaLaallGggleellklkl<-*
++ ra+ +da++ l+ a+ La+ll +g + ++ +
T05D4.5 64 SDERARVIDARAVLDSAQKHLATLLKNGGKGGDEDID 100
MSP_domain: domain 1 of 1, from 120 to 244: score 94.9, E = 1.5e-26
*->elklePpvtvtvfpnnlpfdkqggtstltltNpsdkriaFKvKtTnn
+ + + ++++t+ ++++ + +++++ ++N+s+ +++FK+K+++n
T05D4.5 120 CPFYFDQRILTIVGRVGEVP---VQHWFAIYNTSPFPYMFKIKCSDN 163
klYrVrPvyGilePgesvniavtrnvvVtlqrfkglpkpddknkdKfvvq
l++++Pv+G+l++ + ++i vt + ++++p+ +++ ++ ++
T05D4.5 164 SLFKIHPVCGVLDALCDAEISVT-------FVGAHVPP---RYTSYLSIH 203
yleapsedadrqqkraareafkaaaaagvlvgerkipvvfe<-*
+++ ++ + d++q+++ r+ f++ ++ v++ ++ p++++
T05D4.5 204 SMLPDPLFLDVPQAFRNRRNFETRQRLYVEYAYHEDPILVT 244
VacA: domain 1 of 1, from 263 to 282: score 0.0, E = 3.7
*->tnniDsFAKRLqALKDqRFA<-*
t + +sFAK+L+A K R
T05D4.5 263 TDEAESFAKKLKAEKVERLD 282
Thymidylate_kin: domain 1 of 1, from 351 to 372: score 4.3, E = 1.2
*->wderilvidAsns.ieevheeI<-*
wd +++ i A++++i +v+++I
T05D4.5 351 WDLEMKNIKAEKKkIGAVKKKI 372
ERF: domain 1 of 1, from 361 to 385: score 3.7, E = 6.4
*->fykamaalqanikqPEktHkeqPkidkkkntgyf<-*
+ k++ a++++i +++k+ +kk+ +++
T05D4.5 361 EKKKIGAVKKKI--------KAEKKEDKKK-PMG 385