hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/T05A6.2a
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  T05A6.2a  CE18928  locus:cki-2 posterior sex combs protein-like domain status:Partially_confirmed TR:Q22198 protein_id:CAA90670.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
CDI      Cyclin-dependent kinase inhibitor              200.5    2.6e-56   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CDI        1/1      11   116 ..     1   108 []   200.5  2.6e-56

Alignments of top-scoring domains:
CDI: domain 1 of 1, from 11 to 116: score 200.5, E = 2.6e-56
                   *->ssACRcLFGPvDhEElsReRiWLearlaemeqedqrrWNFDFqtetP
                      ++A+RcLFG++D+EE+sR+   L+++l+em+++d+r++NFDF++++P
    T05A6.2a    11    RKAARCLFGKPDPEEVSRQ---LNSSLEEMYKKDSRKFNFDFSGGVP 54

                   LeGs.GrfeWeeVesksvPeFYrekvsrpRktlkslrrpstslvllqpse
                   ++Gs+G++e+e++++++vP+FYrek++rpRk++++++++++s+++++pse
    T05A6.2a    55 IVGSrGDYEFESISASEVPSFYREKIVRPRKIIARRNSTPVSDTVEMPSE 104

                   aePaeEskedls<-*
                   ++P++Es+e+++
    T05A6.2a   105 SPPVVESNETPL    116

[DB home][top]