Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T04F8.1
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Query: T04F8.1 CE03614 status:Partially_confirmed TR:Q22161 protein_id:CAA91477.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Mtc Tricarboxylate carrier 712.5 2e-237 1
Sprouty Sprouty protein (Spry) 3.5 1.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Sprouty 1/1 290 303 .. 1 14 [. 3.5 1.6
Mtc 1/1 19 324 .] 1 344 [] 712.5 2e-237
Alignments of top-scoring domains:
Sprouty: domain 1 of 1, from 290 to 303: score 3.5, E = 1.6
*->qpatilslDQirPE<-*
+++t++s+DQi PE
T04F8.1 290 PQLTPVSFDQIEPE 303
Mtc: domain 1 of 1, from 19 to 324: score 712.5, E = 2e-237
*->wDQsTFlGRarHFfsiTdPrtLltSekkLeeareiverYkaGedvsp
wDQsTF+GRa+HFf+iT+P++L+++ek+L+e+++ive+Y++G +vs+
T04F8.1 19 WDQSTFEGRAKHFFAITNPLNLFHGEKQLDEFKKIVEDYRKG-SVSN 64
nltvdeLWrAKklyDSafHPDTGEkvllpGRMSaqVPmNmviTgGMLtpy
+lt ++LW+AK+++DSafHP+TGEk++++GRMSaqVPmNm iTgGMLt+y
T04F8.1 65 DLTLNQLWKAKHVVDSAFHPSTGEKMMMVGRMSAQVPMNMAITGGMLTFY 114
rstParRvVFWQWfNQSfNAiVNYtNRSgdsplslsqLlvSYvaATtgAc
+s++a v+FWQW+NQSfNA+VNYtNRSgd + ++ qLlvSY+aAT+gA+
T04F8.1 115 KSPMA--VIFWQWLNQSFNAVVNYTNRSGDGGSVS-QLLVSYCAATGGAL 161
gaALGLnklvKklpnltPtsklLlgRLVPFaAVAaANiiNiplMRqnElr
+aALGLn+lvKk+p P L+gRLVPF+AV++AN+iNip+MR+ El+
T04F8.1 162 TAALGLNSLVKKAP---P----LVGRLVPFVAVCVANSINIPMMRRGELT 204
SSGeGIeVfDedTGkvvGkSkkSAVAAklAiaqVvLSRiamAvPlMvlpP
eGI++ De+ G+v+G+S+ +A++Ai+qVv+SRi+mAvP+++++P
T04F8.1 205 ---EGIDILDEN-GQVIGQSPG---VAQSAISQVVVSRIFMAVPSFAFIP 247
limnrLeHPTRGkrafyrrrpwlQKYSeiPvqtlLcglvLafatPlacAl
+++n+Le kr++++++p++ ++P+qt+LcglvL ++tP++cAl
T04F8.1 248 VVVNALE-----KRPYFKANPKM----FLPLQTILCGLVLSVSTPVGCAL 288
FPQksairyTVqCGLyhvskLEpelqqlinklgqktppevVYyNKGL<-*
FPQ +++ +++++Epel+q+i++l++ pp+++Y+NKGL
T04F8.1 289 FPQLTPV---------SFDQIEPELAQKIKNLPN--PPKQLYCNKGL 324