Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T04D3.4
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Query: T04D3.4 CE13159 locus:gcy-35 guanylate cyclase beta subunit status:Partially_confirmed TR:O02298 protein_id:CAB03288.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
guanylate_cyc Adenylate and Guanylate cyclase catalyt 251.5 1.2e-71 1
Nnf1 Nnf1 1.5 6.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Nnf1 1/1 357 384 .. 1 35 [. 1.5 6.4
guanylate_cyc 1/1 415 600 .. 1 226 [] 251.5 1.2e-71
Alignments of top-scoring domains:
Nnf1: domain 1 of 1, from 357 to 384: score 1.5, E = 6.4
*->MvssHGiRkirLdav.lsRaLdesIaklqsldKvas<-*
M + r+ +v+l+R+L+e+ kl K+a+
T04D3.4 357 MLN-----QSRMSQVeLNRTLEETTKKLK---KMAQ 384
guanylate_cyc: domain 1 of 1, from 415 to 600: score 251.5, E = 1.2e-71
*->vyaerydeVtilFaDIvgFTalssrhssNngPeevvrlLNelftrFD
+ a+++ ++t+lF+DIv FT++++ ++ P vv+lLN+l+ rFD
T04D3.4 415 MDAKEFADCTLLFTDIVTFTNICAMCT----PYDVVTLLNDLYLRFD 457
elvdehkfgvyKiKTiGDaYMaasGlppaakakqtssKlaeeldedsaaH
+lv+ h + yK++TiGDaYM++ G+p++ ++ H
T04D3.4 458 RLVGLH--DAYKVETIGDAYMIVGGVPER-----------------CENH 488
aakladfALamvealqevnvghteggpPlvLyrglqlRiGIHtGpVvaGv
a++++ ++++m+ + v ++ t p +++R G+H+GpVvaGv
T04D3.4 489 AERVLNISIGMLMESKLVLSPITH-KP-------IKIRLGVHCGPVVAGV 530
iGgaskrprYdvwGdTVNvASRmEStGvpgekIhVsestyrl.Lkelesf
+G +k+prY+++GdTVNvA++mES+G++ kIhVse+ + +Lk+ s+
T04D3.4 531 VG--IKMPRYCLFGDTVNVANKMESNGIQC-KIHVSETGKLNgLKANPSY 577
qfefaleprgevsvkGkgkpGaietYfLkg<-*
+f +rg + +Gkg + + tYfL++
T04D3.4 578 VFI----DRGNTEIRGKG-M--MYTYFLER 600