Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T03E6.7
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Query: T03E6.7 CE16333 locus:cpl-1 cathepsin-like protease status:Confirmed TR:O45734 protein_id:CAB07275.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Peptidase_C1 Papain family cysteine protease 456.7 3.8e-136 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Peptidase_C1 1/1 120 336 .. 1 337 [] 456.7 3.8e-136
Alignments of top-scoring domains:
Peptidase_C1: domain 1 of 1, from 120 to 336: score 456.7, E = 3.8e-136
*->lPesfDWReWkggaVtpVKdQGiqCGSCWAFSavgalEgryciktgt
+P+++DWR+ + Vt VK+QG +CGSCWAFSa+galEg++++k
T03E6.7 120 VPDEVDWRD-TH-LVTDVKNQG-MCGSCWAFSATGALEGQHARKL-- 161
kawggklvsLSEQqLvDCdgedygnngesCGyGCnGGGlmdnAfeYikke
g+lvsLSEQ+LvDC++ +ygn+ GCnG Glmd+AfeYi +
T03E6.7 162 ----GQLVSLSEQNLVDCST-KYGNH------GCNG-GLMDQAFEYIRD- 198
qIsnNgGlvtEsdYekgCkPYtdfPCgkdggndtyypCpgkaydpndTgt
N+G++tE++Y PY+ g+d +
T03E6.7 199 ----NHGVDTEESY-----PYK----GRD-------------------MK 216
CkynckknskypktyakikgygdvpynvsTydEealqkalaknGPvsVai
C++n kk ++ a +kgy+d p++ dEe+l+ a+a+ GP+s+ai
T03E6.7 217 CHFN-KKTVG-----ADDKGYVDTPEG----DEEQLKIAVATQGPISIAI 256
dasedskgDFqlYksGendvgyGvYkhtsageCggtpfteLdHAVliVGY
da+++s FqlYk+G vY++ eC+++ eLdH+Vl+VGY
T03E6.7 257 DAGHRS---FQLYKKG-------VYYDE---ECSSE---ELDHGVLLVGY 290
GteneggtfdetssskksesgiqvssgsngssgSSgssgapiedkgkdYW
Gt+ e dYW
T03E6.7 291 GTDPEH----------------------------------------GDYW 300
IVKNSWGtdWGEnGYfriaRgknksgkneCGIaseasypi<-*
IVKNSWG+ WGE+GY+riaR++n n+CG+a+ asyp+
T03E6.7 301 IVKNSWGAGWGEKGYIRIARNRN----NHCGVATKASYPL 336