Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T02D1.6
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Query: T02D1.6 CE30684 7 transmembrane receptor (rhodopsin family) status:Partially_confirmed TN:CAB05904 protein_id:CAB05904.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
7tm_1 7 transmembrane receptor (rhodopsin family 65.2 1.6e-20 2
MHYT Bacterial signalling protein N terminal re 4.5 5.1 1
Scramblase Scramblase 3.5 5.4 1
FLYWCH FLYWCH zinc finger domain 2.8 9.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
7tm_1 1/2 60 71 .. 214 225 .. -8.5 1.1e+04
MHYT 1/1 119 151 .. 31 63 .] 4.5 5.1
Scramblase 1/1 152 165 .. 245 258 .] 3.5 5.4
FLYWCH 1/1 161 175 .. 50 69 .] 2.8 9.1
7tm_1 2/2 105 335 .. 21 263 .. 72.1 9.4e-23
Alignments of top-scoring domains:
7tm_1: domain 1 of 2, from 60 to 71: score -8.5, E = 1.1e+04
*->llvvvvvFvlCW<-*
+l+vvvvFvlC+
T02D1.6 60 VLIVVVVFVLCF 71
MHYT: domain 1 of 1, from 119 to 151: score 4.5, E = 5.1
*->lSlliAVaasgvAlllalrarltlsllaggall<-*
lSl A++ s++++++ + +++ +++ g +
T02D1.6 119 LSLPPAILDSVIGFWIFGTTMCKVHHVFGSVGR 151
Scramblase: domain 1 of 1, from 152 to 165: score 3.5, E = 5.4
*->lgatFLIDfdyFer<-*
+++tFLI + F r
T02D1.6 152 IASTFLITAMSFDR 165
FLYWCH: domain 1 of 1, from 161 to 175: score 2.8, E = 9.1
*->ThkdknGservivtngeHnH<-*
+ +d r++ ++ H+H
T02D1.6 161 MSFD-----RYVAVCYPHHH 175
7tm_1: domain 2 of 2, from 105 to 335: score 72.1, E = 9.4e-23
*->ifilNLAvADLLflltlppwalyylvggsedWpfGsalCklvtaldv
++i+ L+v D+ ++l+lpp +l ++g W fG+ +Ck+ + +++
T02D1.6 105 LYIGALCVCDFVMSLSLPPAILDSVIG---FWIFGTTMCKVHHVFGS 148
vnmyaSillLtaISiDRYlAIvhPlryrrrrtsprrAkvvillvWvlall
v aS +l+ta+S+DRY+A+++P ++r r + +i++ +a++
T02D1.6 149 VGRIASTFLITAMSFDRYVAVCYPHHHRLRSR--TFVISTIACLSSIAFV 196
lslPpllfswvktveegngtln........vnvtvClidfpeestasvst
l lP+l++ + + + +++++ + ++v v+ C+ ++p +
T02D1.6 197 LLLPMLTY-ASAKEMVLHELKAhesanitrVRVFKCSDMMPGPI------ 239
wlvsyvllstlvgFllPllvilvcYtrIlrtlrkrarkgaskkrsskerk
++++ +++g+++Pl++i+++++ + +l+++ r ++ +++ r+
T02D1.6 240 -FYWFTSTTFILGYVVPLILIVYFNLKLINKLYAHKRVLP--RSAIPVRR 286
aaktllvvvvvFvlCWlPyfivllldtlc.lsiimsstCelervlptall
++ ++++ v ++CW+Py +l++ +++l + ++ +++l+
T02D1.6 287 VVVYTVLIAAVYFVCWTPYWFSVLYAIIMsLLG------KPTTNSEWVLF 330
vtlwL<-*
+++++
T02D1.6 331 AIYCV 335