Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T02D1.5
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: T02D1.5 CE16325 ABC transporters status:Partially_confirmed TR:O45730 protein_id:CAB05909.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ABC_tran ABC transporter 135.7 3.8e-38 1
AAA ATPase family associated with various cel 11.8 0.016 1
M M protein repeat 9.7 0.63 1
SMC_N RecF/RecN/SMC N terminal domain 8.5 0.19 1
CPSase_L_D3 Carbamoyl-phosphate synthetase large chai 7.2 0.038 1
DUF325 Viral domain of unknown function 6.3 0.2 1
EutH Ethanolamine utilisation protein, EutH 3.9 3.4 1
Rad17 Rad17 cell cycle checkpoint protein 3.7 2.7 1
SKI Shikimate kinase 3.5 7.9 1
Steroid_dh 3-oxo-5-alpha-steroid 4-dehydrogenase 2.8 6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
EutH 1/1 27 54 .. 369 396 .] 3.9 3.4
Steroid_dh 1/1 82 89 .. 202 209 .] 2.8 6
AAA 1/1 496 510 .. 1 15 [. 11.8 0.016
SMC_N 1/1 499 511 .. 30 42 .. 8.5 0.19
Rad17 1/1 498 514 .. 52 68 .. 3.7 2.7
SKI 1/1 495 515 .. 1 21 [. 3.5 7.9
CPSase_L_D3 1/1 521 536 .. 1 16 [. 7.2 0.038
DUF325 1/1 550 564 .. 59 73 .] 6.3 0.2
ABC_tran 1/1 494 671 .. 1 199 [] 135.7 3.8e-38
M 1/1 691 711 .. 1 21 [] 9.7 0.63
Alignments of top-scoring domains:
EutH: domain 1 of 1, from 27 to 54: score 3.9, E = 3.4
*->GvtAvavAirlspkeaaraakreaeads<-*
Gv AvavA + s ++ + + ds
T02D1.5 27 GVAAVAVAHWVSLRKSQKSHHKMEKEDS 54
Steroid_dh: domain 1 of 1, from 82 to 89: score 2.8, E = 6
*->kaLIPFvl<-*
k++IP+v+
T02D1.5 82 KIMIPGVF 89
AAA: domain 1 of 1, from 496 to 510: score 11.8, E = 0.016
*->gvLLyGPPGtGKTlL<-*
+vL GP G+GK++L
T02D1.5 496 HVLITGPNGCGKSSL 510
SMC_N: domain 1 of 1, from 499 to 511: score 8.5, E = 0.19
*->IvGPNGSGKSNil<-*
I+GPNG+GKS+++
T02D1.5 499 ITGPNGCGKSSLF 511
Rad17: domain 1 of 1, from 498 to 514: score 3.7, E = 2.7
*->LLtGPsGcGKSTtvkvL<-*
L+tGP GcGKS ++L
T02D1.5 498 LITGPNGCGKSSLFRIL 514
SKI: domain 1 of 1, from 495 to 515: score 3.5, E = 7.9
*->rnifLIGmmGaGKsTvGrlLA<-*
+++ + G+ G+GKs++ r+L+
T02D1.5 495 MHVLITGPNGCGKSSLFRILG 515
CPSase_L_D3: domain 1 of 1, from 521 to 536: score 7.2, E = 0.038
*->lreeLrtPtddRlfai<-*
+r +L++Pt dR+++i
T02D1.5 521 YRGHLEKPTSDRMYYI 536
DUF325: domain 1 of 1, from 550 to 564: score 6.3, E = 0.2
*->qvYaPdATIDMRkQP<-*
qv Pd TI MR+Q
T02D1.5 550 QVIYPDTTIQMRRQG 564
ABC_tran: domain 1 of 1, from 494 to 671: score 135.7, E = 3.8e-38
*->GevlalvGpNGaGKSTLLklisGllppteGtilldGardlsdlsklk
G ++ ++GpNG+GKS+L++++ Gl+p + G + + d+ ++
T02D1.5 494 GMHVLITGPNGCGKSSLFRILGGLWPVYRGHLEKPT-SDRMYYI--- 536
erlerlrknigvvfQdptlfpnpeltvreniafglrls....lglskdeq
+Q p+ +t+r++++++ ++ +++g++++++
T02D1.5 537 -------------PQRPYMT---LGTLRDQVIYPDTTIqmrrQGITDQDL 570
rdrlkkagaeelLerlglgydhlldrrpgtLSGGqkQRvaiARaLltkpk
+ l+ +++e+++er g + ++ +++ + LSGG+kQR++ AR+++++pk
T02D1.5 571 MTMLRIVHLEHIVEREGGW--DAQNDWMDVLSGGEKQRMGMARVFYHRPK 618
lLlLDEPTagLDpasraqllellrelrqqggTvllitHdldlldrlaDri
+ lLDE+T++ ++ ++ +++++++ g+T+l++tH++ l++ +++ +
T02D1.5 619 YALLDECTSAVSIDVEGSIYQAIKDS---GITLLTVTHRPSLWKFHTHLL 665
lvledG<-*
+ +G
T02D1.5 666 QYDGEG 671
M: domain 1 of 1, from 691 to 711: score 9.7, E = 0.63
*->eaKKeLEaelqeLeeelqkLe<-*
e+K++LE++l+e +++Le
T02D1.5 691 EEKQQLEKQLAEVPRWKERLE 711
[output cut off at A = 10 top alignments]