Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T01H8.1b
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Query: T01H8.1b CE13014 Protein kinase C terminal domain status:Partially_confirmed TR:Q21734
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pkinase Protein kinase domain 588.2 5.1e-173 2
pkinase_C Protein kinase C terminal domain 63.1 3.5e-18 1
PNPase Polyribonucleotide nucleotidyltransferase, 2.5 4.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PNPase 1/1 3 17 .. 1 15 [. 2.5 4.4
pkinase 1/2 47 306 .. 1 294 [] 290.5 2.1e-83
pkinase_C 1/1 307 371 .. 1 70 [] 63.1 3.5e-18
pkinase 2/2 397 655 .. 1 294 [] 298.1 1.1e-85
Alignments of top-scoring domains:
PNPase: domain 1 of 1, from 3 to 17: score 2.5, E = 4.4
*->Leekvaalaeerlse<-*
++++v+++ae ++++
T01H8.1b 3 ILAEVEEFAENEIEQ 17
pkinase: domain 1 of 2, from 47 to 306: score 290.5, E = 2.1e-83
*->yelleklGeGsfGkVykakhkd..ktgkiVAvKilkkekesikek..
+ell++lG+GsfGkV++++ + ++++g +A+K+lk k ++k +++
T01H8.1b 47 FELLKVLGQGSFGKVFLVRKVRgrDSGHVYAMKVLK--KATLKVRdr 91
.rflrEiqilkrLsHpNIvrligvfedtddhlylvmEymegGdLfdylrr
+r+ E il+++sHp+Iv+l+++f+ t+++lyl++++++gGdLf++l++
T01H8.1b 92 qRTKLERNILAHISHPFIVKLHYAFQ-TEGKLYLILDFLRGGDLFTRLSK 140
nggplsekeakkialQilrGleYLHsngivHRDLKpeNILldendgtvKi
+ ++e+++k++ ++ +le+LHs giv+RDLKpeNILld + g++K+
T01H8.1b 141 EV-MFTEDDVKFYLAELTLALEHLHSLGIVYRDLKPENILLDAD-GHIKV 188
aDFGLArlle.sssklttfvGTpwYmmAPEvilegrgysskvDvWSlGvi
+DFGL+++ +s k+++f+GT +Ym APEv +++rg+s ++D WSlGv+
T01H8.1b 189 TDFGLSKEAIdSEKKTYSFCGTVEYM-APEV-INRRGHSMAADFWSLGVL 236
LyElltggplfpgadlpaftggdevdqliifvlklPfsdelpktridple
++E+ltg +lPf+++ r+d++
T01H8.1b 237 MFEMLTG--------------------------HLPFQGR---DRNDTMT 257
elfriikrpglrlplpsncSeelkdLlkkcLnkDPskRpG..satakeil
++++ ++ p+ + e+++Ll+ +++++ ++R+G + +ei+
T01H8.1b 258 QILKAKLS------MPHFLTQEAQSLLRALFKRNSQNRLGagPDGVEEIK 301
nhpwf<-*
h +f
T01H8.1b 302 RHAFF 306
pkinase_C: domain 1 of 1, from 307 to 371: score 63.1, E = 3.5e-18
*->reIdWdkLEnkeiePPFKPkiksprDtsNFDkeFTrekPvLTPvDsv
++Id+ kL+nkei+PPFKP ++ ts+FD eFT+ +P ++P+ +
T01H8.1b 307 AKIDFVKLLNKEIDPPFKPALSTVDSTSYFDPEFTKRTPKDSPALPA 353
lirsiDQeeFrGFSYvnsPersf<-*
+ e FrGFS+v+
T01H8.1b 354 SANGH--EIFRGFSFVS-NA--V 371
pkinase: domain 2 of 2, from 397 to 655: score 298.1, E = 1.1e-85
*->yelleklGeGsfGkVykakhkdktgkiVAvKilkkekesikekrflr
ye+lek+G G+ ++V k++ k t +++AvKi+k k ++ ++
T01H8.1b 397 YEILEKIGNGAHSVVHKCQMK-ATRRKYAVKIVK--KAVFD---ATE 437
EiqilkrLs.HpNIvrligvfedtddhlylvmEymegGdLfdylrrnggp
E+ il r s+H ++v+l++v+e +++ +y++ E++egG+L+d l++++
T01H8.1b 438 EVDILLRHShHQFVVKLFDVYE-DETAIYMIEELCEGGELLDKLVNKKSL 486
lsekeakkialQilrGleYLHsngivHRDLKpeNILlden...dgtvKia
seke+ i+ +l++++YLHs+ + HRDL ++NIL+ +++++ ++i
T01H8.1b 487 GSEKEVAAIMANLLNAVQYLHSQQVAHRDLTAANILFALKdgdPSSLRIV 536
DFGLArlle.sssklttfvGTpwYmmAPEvilegrgysskvDvWSlGviL
DFG+A++ + +++l+t + T ++ APEv l+ +gy++ +DvWSlGv+L
T01H8.1b 537 DFGFAKQSRaENGMLMTPCYTAQFV-APEV-LRKQGYDRSCDVWSLGVLL 584
yElltggplfpgadlpaftggdevdqliifvlklPfsdelpktridplee
+ +ltg +Pf + +t++++l++
T01H8.1b 585 HTMLTG--------------------------CTPFAMGPNDTPDQILQR 608
lfriikrpglrlplpsncSeelkdLlkkcLnkDPskRpGsatakeilnhp
+ +++ + p+++++S+e+kdL++k+L++DP++R tak++l+h+
T01H8.1b 609 VGDGKIS--MTHPVWDTISDEAKDLVRKMLDVDPNRRV---TAKQALQHK 653
wf<-*
w+
T01H8.1b 654 WI 655