Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T01C3.7
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Query: T01C3.7 CE12920 locus:fib-1 fibrillarin status:Confirmed SW:Q22053 protein_id:CAB01657.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Fibrillarin Fibrillarin 608.5 4e-179 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Fibrillarin 1/1 115 346 .. 1 233 [] 608.5 4e-179
Alignments of top-scoring domains:
Fibrillarin: domain 1 of 1, from 115 to 346: score 608.5, E = 4e-179
*->akvivephrnleGVfigkGkedaLvTKnlvpGesVYgEKrisveete
++v+vephr l GVfi+kGkedaL+TKn+v+GesVYgEKr+sv++++
T01C3.7 115 KTVVVEPHR-LGGVFIVKGKEDALATKNMVVGESVYGEKRVSVDDGA 160
gkiEYRvWNPfrSKLAAaIigGlkeipIkpGsKVLYLGAAsGTTvSHVsD
g+iEYRvWNPfrSKLAA+I+gGl++++IkpG+K+LYLGAAsGTTvSH+sD
T01C3.7 161 GSIEYRVWNPFRSKLAASIMGGLENTHIKPGTKLLYLGAASGTTVSHCSD 210
ivgPeGiVYAVEFShRsgRdLlemakkRtNviPIieDArkPqkYrmlVgm
+vgPeGiVYAVEFShRsgRdLl +akkR+Nv+PI+eDAr+P+kYrmlVgm
T01C3.7 211 VVGPEGIVYAVEFSHRSGRDLLGVAKKRPNVVPIVEDARHPHKYRMLVGM 260
VDvIFaDVAQPdQArIlalNAkaFLkngGhvvISIKAncIDsTaepevVF
VDvIF+DVAQPdQArI+alNA++FL+ngGh+vISIKAncIDsTaepe+VF
T01C3.7 261 VDVIFSDVAQPDQARIVALNAQNFLRNGGHAVISIKANCIDSTAEPEAVF 310
arevekLkeegfKpveqltlEPfErDHavvVGiyrg<-*
a ev+kLkee+fKp+eq+tlEP+ErDHavvV++yr+
T01C3.7 311 AGEVNKLKEEKFKPLEQVTLEPYERDHAVVVAVYRP 346