Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/T01C3.1
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Query: T01C3.1 CE12908 WD domain, G-beta repeats status:Partially_confirmed TR:Q22059 protein_id:CAB01663.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
WD40 WD domain, G-beta repeat 97.1 7.9e-26 6
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
WD40 1/6 83 122 .. 1 39 [] 23.5 6.8e-05
WD40 2/6 129 168 .. 1 39 [] 49.1 3.7e-12
WD40 3/6 236 244 .. 31 39 .] 1.4 1.3e+02
WD40 4/6 259 297 .. 1 39 [] 3.6 32
WD40 5/6 360 388 .. 9 39 .] 13.2 0.058
WD40 6/6 411 448 .. 1 39 [] 16.3 0.0077
Alignments of top-scoring domains:
WD40: domain 1 of 6, from 83 to 122: score 23.5, E = 6.8e-05
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
+l+ +++H +++++v +p ++++s S D ti+ Wd
T01C3.1 83 ERQLYFFpAHDGAIMDVVGVPQKESQIVSISGDSTIRCWD 122
WD40: domain 2 of 6, from 129 to 168: score 49.1, E = 3.7e-12
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
+++ gH+++v++++f+pd+++++++g+rD +k+Wd
T01C3.1 129 DRKSQVFfGHEGSVRSICFAPDDPNVFVTGGRDFQVKIWD 168
WD40: domain 3 of 6, from 236 to 244: score 1.4, E = 1.3e+02
*->rDgtiklWd<-*
+D i++Wd
T01C3.1 236 ADSGIRVWD 244
WD40: domain 4 of 6, from 259 to 297: score 3.6, E = 32
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
+ t + + +vtc+ + g++l+ ++ D +i ++
T01C3.1 259 ILKVPTSnKKSYGVTCLTLDRF-GNRLFASCTDSSIFEYS 297
WD40: domain 5 of 6, from 360 to 388: score 13.2, E = 0.058
*->HtspvtcvafspdsgpylasgSrDgtiklWd<-*
H ++ t va+sp + ++a+gS+D +Wd
T01C3.1 360 H-NFYTQVACSPV-SDVIACGSEDSRAVVWD 388
WD40: domain 6 of 6, from 411 to 448: score 16.3, E = 0.0077
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
+ + + +gH + v v +s g+y+ s+ + g +++W+
T01C3.1 411 KLPRFSCdGHLKQVLNVGWSSR-GTYFMSCDE-GGVRIWS 448