Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/R11G11.14
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Query:  R11G11.14  CE28762   lipase status:Partially_confirmed TR:O16956 protein_id:AAC69088.2

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N
--------       -----------                              -----    ------- ---
abhydro_lipase ab-hydrolase associated lipase region    157.6    1.2e-43   1
abhydrolase    alpha/beta hydrolase fold                 33.8    2.2e-09   1
ATP-synt_8     ATP synthase protein 8                     7.0       0.29   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
abhydro_lipase   1/1      22    93 ..     1    71 []   157.6  1.2e-43
ATP-synt_8       1/1     124   139 ..    41    56 .]     7.0     0.29
abhydrolase      1/1     107   175 ..     1    57 [.    33.8  2.2e-09

Alignments of top-scoring domains:
abhydro_lipase: domain 1 of 1, from 22 to 93: score 157.6, E = 1.2e-43
                   *->idpeanmnvsqlIkkwGYpsEeHtVtTeDGYILtLhRIprgkknktd
                       dpe++m+++q+I++wGYp+++++VtT+DGYIL+LhRIp+gk+n+t+
   R11G11.14    22    SDPELHMTTPQIIERWGYPAMIYSVTTDDGYILELHRIPHGKTNVTW 68

                   .lgkrPvVlLQHGLlasSsnWVvNl<-*
                   ++gk PvV++QHGLl++S++W +Nl
   R11G11.14    69 pNGKQPVVFMQHGLLCASTDWTMNL    93

ATP-synt_8: domain 1 of 1, from 124 to 139: score 7.0, E = 0.29
                   *->ktklkkkpnpWnWkWT<-*
                      k+ + +++ +W+W W
   R11G11.14   124    KNLKASHSDFWEWSWD    139

abhydrolase: domain 1 of 1, from 107 to 175: score 33.8, E = 2.2e-09
                   *->frvillDlrGfGeSsp.............sdlaeyrfddlaedleal
                      f+v+l+++rG  +S ++++ + ++++  +  ++e  + dl ++++++
   R11G11.14   107    FDVWLGNMRGNTYSMKhknlkashsdfweWSWDEMATYDLPAMIDKV 153

                   ldalglekpvilvGhSmGGaial<-*
                   l+ +g+e  +++ GhS+G+++++
   R11G11.14   154 LEVTGQES-LYYMGHSQGTLTMF    175



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