Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/R11A5.4
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Query: R11A5.4 CE12728 phosphoenolpyruvate carboxykinase status:Confirmed TR:O02286 protein_id:CAB05600.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PEPCK Phosphoenolpyruvate carboxykinase 1660.4 0 1
UxaC Glucuronate isomerase 2.7 7.6 1
DUF73 Protein of unknown function DUF73 2.1 9.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF73 1/1 85 94 .. 320 329 .] 2.1 9.6
UxaC 1/1 514 522 .. 1 9 [. 2.7 7.6
PEPCK 1/1 59 654 .] 1 608 [] 1660.4 0
Alignments of top-scoring domains:
DUF73: domain 1 of 1, from 85 to 94: score 2.1, E = 9.6
*->ElIkkikEKl<-*
ElI+k++E++
R11A5.4 85 ELIDKLIERG 94
UxaC: domain 1 of 1, from 514 to 522: score 2.7, E = 7.6
*->MePFMtkdF<-*
M PFM+ +F
R11A5.4 514 MRPFMGYNF 522
PEPCK: domain 1 of 1, from 59 to 654: score 1660.4, E = 0
*->aFveEkaeLcqPeqihiCDGSeeEnkeLierLveqGtlkKLneeKyp
+F++EkaeL++P++i+iCDGS++E++eLi++L+e+G+l+KL+ +y+
R11A5.4 59 RFIAEKAELMRPRGIFICDGSQHEADELIDKLIERGMLSKLE--AYE 103
NcYLARTDPrDVARVESkTfIcTerqeDavPtnpegvkpqlGnWmsPaem
N+Y++RTDP+DVARVESkT+++T++++D+v++++egv+p++G+W++P+++
R11A5.4 104 NNYICRTDPKDVARVESKTWMVTKNKYDTVTHTKEGVEPIMGHWLAPEDL 153
kaalnerFpGCMkGRTMYVIPFSMGPvGsPlsKIGVElTDSpYVVaSMRI
+++l++rFpGCM+GR+MYVIPFSMGPvG+PlsKIG++lTDS+YVV+SMRI
R11A5.4 154 ATELDSRFPGCMAGRIMYVIPFSMGPVGGPLSKIGIQLTDSNYVVLSMRI 203
MTRmGtaVLeaLgdndGeFVrCLHSVGaPlpvgqkdvshWPCNpErtlIa
MTR++++V++aLg+ + +FVrC+HSVG P+pv+q++++hWPCNpEr+lIa
R11A5.4 204 MTRVNNDVWDALGN-Q-DFVRCIHSVGLPRPVKQRVINHWPCNPERVLIA 251
HfPeereIvSfGSGYGGNSLLGKKCFALRIASriArdEGWLAEHMLILGv
H+P+ereI+SfGSGYGGNSLLGKKCFALRIAS+iA+dEGW+AEHMLI+Gv
R11A5.4 252 HRPPEREIWSFGSGYGGNSLLGKKCFALRIASNIAKDEGWMAEHMLIMGV 301
tsPeGekkYiAAAFPSACGKTNLAMLnPPGtlPGWKiecVGDDIAWmKFG
t+P+G++++iAAAFPSACGKTNLAML+P tlPGWK++cVGDDIAWmKFG
R11A5.4 302 TRPCGREHFIAAAFPSACGKTNLAMLEP--TLPGWKVRCVGDDIAWMKFG 349
kdGRLrAINPEnGFFGVAPGTSakTNPnAMaTiqkNTIFTNVAlTsDGdV
+dGRL+AINPE+GFFGVAPGTS+kTNP+A+aT+qkN+IFTNVA+T++G++
R11A5.4 350 EDGRLYAINPEAGFFGVAPGTSNKTNPMAVATFQKNSIFTNVAETANGEY 399
wWEGleeelpdPgvtlidWlGkpWkaGdteepaAHPNSRFcAPAsQCPIi
+WEGle+e++d++v++++WlG++W++G+ + +aAHPNSRF+APA+QCPIi
R11A5.4 400 FWEGLEDEIADKNVDITTWLGEKWHIGE-PGVAAHPNSRFAAPANQCPII 448
DPaWedPeGVPIsAiIFGGRRpaGVPLVyearnWqHGVFmGaamrSEaTA
+P+We+P+GVPI+AiIFGGRRp+GVPL+ye+++W+HGVF+G++++SEaTA
R11A5.4 449 HPDWESPQGVPIEAIIFGGRRPQGVPLIYETNSWEHGVFTGSCLKSEATA 498
AAEhkgktvmhDPFAMrPFfGYNfGdYleHWLslgkrsdeakLPkIFHVN
AAE++gktvmhDP+AMrPF+GYNfG+Yl+HWL+l+++s +k+PkI+HVN
R11A5.4 499 AAEFTGKTVMHDPMAMRPFMGYNFGKYLQHWLDLKTDS--RKMPKIYHVN 546
WFRkdeeGKFLWPGFGeNsRVLkWIlrRveGkagiAveTpIGyvPakgaL
WFRkd+++KFLWPGFG+N+RV++WI+rR++G+++i+veTpIG+vPakg++
R11A5.4 547 WFRKDSNNKFLWPGFGDNIRVIDWIIRRLDGEQEIGVETPIGTVPAKGSI 596
dLeGLddvssvdvskLlsvdkefWeqEveeireyfeeQvGadLPkeitaE
+LeGL++ v++++L+sv++++W+q+++eir++++eQvG+dLP++++aE
R11A5.4 597 NLEGLGE---VNWDELMSVPADYWKQDAQEIRKFLDEQVGEDLPEPVRAE 643
LeaLeqRvkkl<-*
++a+e+Rv++l
R11A5.4 644 MDAQEKRVQTL 654