Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/R10H10.2
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Query:  R10H10.2  CE06293  locus:spe-26 MIPP repeats status:Partially_confirmed SW:Q10579 protein_id:CAA94610.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
Kelch    Kelch motif                                    158.3      1e-43   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Kelch      1/6     243   271 ..    12    39 ..    15.3   0.0098
Kelch      2/6     280   325 ..     1    45 []    34.7  2.6e-08
Kelch      3/6     329   380 ..     1    45 []    44.6  3.8e-11
Kelch      4/6     382   427 ..     1    45 []    43.4  8.5e-11
Kelch      5/6     429   473 ..     1    45 []    20.7  0.00028
Kelch      6/6     476   522 ..     1    45 []     2.2       57

Alignments of top-scoring domains:
Kelch: domain 1 of 6, from 243 to 271: score 15.3, E = 0.0098
                   *->gkiYviGGydg.qslnsvevYDpetntWe<-*
                      + + +iGG+  +q+ + +e +Dpe+n+W+
    R10H10.2   243    DVLIIIGGWLHrQACDRIEWFDPENNCWK    271

Kelch: domain 2 of 6, from 280 to 325: score 34.7, E = 2.6e-08
                   *->pRsgagvvvlggkiYviGGydg.qslnsvevYDpetntWeklpsmp<
                        +++g++ ++g +Y +GG++g++  +  +++++et +W ++++m+
    R10H10.2   280    TLAYHGSAIVDGILYLFGGSTGqRTRCETWKLSTETWQWDRCNNMM  325

                   -*

    R10H10.2     -    -

Kelch: domain 3 of 6, from 329 to 380: score 44.6, E = 3.8e-11
                   *->pRsgagvvvlggkiYviGGydg.......qslnsvevYDpetntWek
                         + ++vv++g+iYv+GG+++++ +++ +++++ ev+Dp+tn+W++
    R10H10.2   329    NYISNSSVVYDGRIYVFGGQNFreitrtaVRSRTGEVFDPKTNKWTE 375

                   lpsmp<-*
                    +s++
    R10H10.2   376 TASLS    380

Kelch: domain 4 of 6, from 382 to 427: score 43.4, E = 8.5e-11
                   *->pRsgagvvvlggkiYviGGydg.qslnsvevYDpetntWeklpsmp<
                      +Rs +++ v++++iYv GG++g+ +l svevY+p  n  ++  ++p
    R10H10.2   382    MRSDCAAEVFENQIYVSGGFNGdMILASVEVYNPIGNVFSRTVDLP  427

                   -*

    R10H10.2     -    -

Kelch: domain 5 of 6, from 429 to 473: score 20.7, E = 0.00028
                   *->pRsgagvvvlggkiYviGGydg.qslnsvevYDpetntWeklpsmp<
                      p +g++   +g+++ ++GG+dg ++ n++++++ + ++W++ p+
    R10H10.2   429    PITGHCLLNHGNQLLIVGGFDGaERQNKIWMWHRT-GEWQQRPEKL  473

                   -*

    R10H10.2     -    -

Kelch: domain 6 of 6, from 476 to 522: score 2.2, E = 57
                   *->pRsgagvvvlggkiYviGGydgqslnsvevYDpe..tntWeklpsmp
                       Rs  ++++++g ++ + Gy+ +   ++e++ pe++  + +++p+ p
    R10H10.2   476    GRSTSAACSYKGWLFSVAGYTEKVEATCEILLPEpnASRFSFIPDVP 522

                   <-*

    R10H10.2     -     -



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