Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/R10H10.1
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Query:  R10H10.1  CE06292   Yeast hypothetical protein YKE0 like status:Confirmed TR:Q21915 protein_id:CAA94609.1

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N
--------  -----------                                   -----    ------- ---
NifU-like NifU-like domain                              137.1    3.1e-37   1
PcrB      PcrB family                                     6.1        1.1   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
PcrB        1/1     121   138 ..   232   250 .]     6.1      1.1
NifU-like   1/1     131   199 ..     1    71 []   137.1  3.1e-37

Alignments of top-scoring domains:
PcrB: domain 1 of 1, from 121 to 138: score 6.1, E = 1.1
                   *->iyedkKavEeaikaikevk<-*
                      ++ed+  v ++ik+i+e++
    R10H10.1   121    VEEDD-EVVMMIKEILETR    138

NifU-like: domain 1 of 1, from 131 to 199: score 137.1, E = 3.1e-37
                   *->veeVideeiRPmLqrDGGDiELvdVdgkdgkVkVrLqGACgGCmsSt
                      ++e+++++iRPm+q+DGGDi++v++d++   Vk+++qG+C+GC+sS+
    R10H10.1   131    IKEILETRIRPMVQEDGGDITYVGFDDG--VVKLKMQGSCTGCPSSG 175

                   mTLkggierkLrerlgevvrVipv<-*
                   +TLk+gie++L+++++ev++Vi+v
    R10H10.1   176 VTLKNGIENMLTFYVPEVKEVIEV    199



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