Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/R10H10.1
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Query: R10H10.1 CE06292 Yeast hypothetical protein YKE0 like status:Confirmed TR:Q21915 protein_id:CAA94609.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
NifU-like NifU-like domain 137.1 3.1e-37 1
PcrB PcrB family 6.1 1.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PcrB 1/1 121 138 .. 232 250 .] 6.1 1.1
NifU-like 1/1 131 199 .. 1 71 [] 137.1 3.1e-37
Alignments of top-scoring domains:
PcrB: domain 1 of 1, from 121 to 138: score 6.1, E = 1.1
*->iyedkKavEeaikaikevk<-*
++ed+ v ++ik+i+e++
R10H10.1 121 VEEDD-EVVMMIKEILETR 138
NifU-like: domain 1 of 1, from 131 to 199: score 137.1, E = 3.1e-37
*->veeVideeiRPmLqrDGGDiELvdVdgkdgkVkVrLqGACgGCmsSt
++e+++++iRPm+q+DGGDi++v++d++ Vk+++qG+C+GC+sS+
R10H10.1 131 IKEILETRIRPMVQEDGGDITYVGFDDG--VVKLKMQGSCTGCPSSG 175
mTLkggierkLrerlgevvrVipv<-*
+TLk+gie++L+++++ev++Vi+v
R10H10.1 176 VTLKNGIENMLTFYVPEVKEVIEV 199