Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/R10E4.4
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  R10E4.4  CE03558  locus:mcm-5 CDC46 status:Confirmed SW:Q21902 protein_id:CAA90765.1

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
MCM             MCM2/3/5 family                         980.8   3.3e-291   1
DUF411          Protein of unknown function, DUF          4.3        8.7   1
NAM             No apical meristem (NAM) protein          3.5        8.5   1
Erythro_esteras Erythromycin esterase                     2.8        5.6   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
NAM               1/1      62    71 ..   125   134 .]     3.5      8.5
Erythro_esteras   1/1      96   118 ..   398   420 .]     2.8      5.6
DUF411            1/1     327   335 ..    91    99 .]     4.3      8.7
MCM               1/1     133   673 ..     1   617 []   980.8 3.3e-291

Alignments of top-scoring domains:
NAM: domain 1 of 1, from 62 to 71: score 3.5, E = 8.5
                   *->dWvMHEYRlt<-*
                      +++ HEYRl+
     R10E4.4    62    NYFSHEYRLE    71

Erythro_esteras: domain 1 of 1, from 96 to 118: score 2.8, E = 5.6
                   *->leaLEvaarliAleskkpsplgk<-*
                      l aLE+aa+  A e ++p+p g+
     R10E4.4    96    LPALEEAAKIVADEITTPRPKGE    118

DUF411: domain 1 of 1, from 327 to 335: score 4.3, E = 8.7
                   *->rKdaYdVva<-*
                      rKdaY+++a
     R10E4.4   327    RKDAYELIA    335

MCM: domain 1 of 1, from 133 to 673: score 980.8, E = 3.3e-291
                   *->kpisiReLrashigkLVrvsGiVtraSeVrPklkkavytCpkCghtv
                       p+s+R++++  ++++V++sGi+++a +Vr k++k++ +C++C+ht+
     R10E4.4   133    YPTSLRQVKSAQVSQVVKISGIIVAAAQVRSKATKVTLQCRQCKHTI 179

                   eveiqdlfinsftkptfcpsreCptcqskgdlkeNGdeCplgpfildhdk
                   +++      +++++  f+++r+C ++q++++++     Cp++p+i+ +dk
     R10E4.4   180 PDVSIK---PGLEG--FALPRTCAAPQQGQMQR-----CPIDPYIMLPDK 219

                   SkfvDfQelkiQElpeevPaGqiPRsvdvillddLVdkvkPGDrVevtGI
                   +++vD+Q+lk+QE+pe+vP+G++PR+++++ +++L+dkv+PG+rV+++G+
     R10E4.4   220 CECVDYQTLKLQENPEDVPHGEMPRHLQLFTERYLTDKVVPGNRVTIVGV 269

                   yrvvpdvqLgpkkrlntsgsrGvtglkslgvgglvfktyieAnhieklds
                   y++++       + ++++        ksl   ++++ +y+++++i++  s
     R10E4.4   270 YSIKKL------IQKKGGD-------KSL---QGIRTPYLRVLGIHMETS 303

                   eiqdnkrlggrkDlegseeeiteelllsqlsdedeeeikklakdkkdiye
                   ++           ++++ + +t+e         +e+++k la++k d ye
     R10E4.4   304 GP-----------GRTNFTTFTPE---------EERMFKTLAQRK-DAYE 332

                   kLarSlAPsIYGhedVKKAILLlLfGGveKnlpdGtkdrlRGDINiLLvG
                   ++a+S+APsIYG  d+KK I++lLfGG +K+lpdG+   +RGDIN+LL+G
     R10E4.4   333 LIAKSIAPSIYGSADIKKSIACLLFGGARKKLPDGIT--RRGDINVLLLG 380

                   DPGKTAKSQlLKyVeklaPRAvYTsGkGSSaVGLaTAaVvRDpeTgEDwv
                   DPG TAKSQlLK+Ve+++P++vYTsGkGSSa+GL TA+V+RDp+++  ++
     R10E4.4   381 DPG-TAKSQLLKFVEQVSPIGVYTSGKGSSAAGL-TASVIRDPQSRS-FI 427

                   LEaGALVLADgGvcCIDEFDKMndsDRtaIHEAMEQQTISIAKAGItttL
                   +E+GA+VLADgGv+CIDEFDKM+++DR+aIHEAMEQQTISIAKAGItttL
     R10E4.4   428 MEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTL 477

                   NARcSvLAAANPiyGRYDpkktpieNIdLpapLLSRFDLiFvvlDepDee
                   N+RcSvLAAAN +yGR+D ++   +NId+++++LSRFD+i++v+D++D
     R10E4.4   478 NSRCSVLAAANSVYGRWDESRGD-DNIDFMPTILSRFDMIYIVKDTHDVL 526

                   kDeeLAkHvvdvHrhskP.eedgeegglvlasdadNkaeeeeieeepyek
                   kD  LAkHv++vH+++ + +e++ +g++        k++ ++++ +++++
     R10E4.4   527 KDATLAKHVIEVHVNASAaKERDIAGVP--------KTATTDSDGVMTMF 568

                   fDsllhgrkkekarsekleidggeidielLrkYIaYAReqikPkLseeAa
                    D                  ++g ++ie+L+k+++YAR ++ P+L+++A+
     R10E4.4   569 -D------------------TDGFLTIEFLKKFVTYARLNCGPRLTPQAS 599

                   ekiveaYvelRkddkr.Esd.tgs.asrstipITaRqLEsiIRLsEAhAK
                   ek+v++Yv++R+   + +++++g++a+ s ipIT+RqLE+i+R++E++AK
     R10E4.4   600 EKLVNHYVKMRNPVVNaDAFkSGKkAHNSAIPITVRQLEAIVRIAESIAK 649

                   lrLsdeVeeeDVeeAirLireslk<-*
                   ++L+ ++++++VeeA+rL+r+s++
     R10E4.4   650 MELQQFATDKHVEEALRLFRVSTI    673



[DB home][top]