Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/R10E11.4
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Query: R10E11.4 CE00306 locus:sqv-3 Galactosyltransferase status:Confirmed SW:P34548 protein_id:CAA82350.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Galactosyl_T_2 Galactosyltransferase 546.5 2.8e-169 1
EBNA1 Epstein Barr virus nuclear antigen-1, 4.0 2.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
EBNA1 1/1 20 56 .. 101 139 .. 4.0 2.5
Galactosyl_T_2 1/1 1 279 [. 1 329 [] 546.5 2.8e-169
Alignments of top-scoring domains:
EBNA1: domain 1 of 1, from 20 to 56: score 4.0, E = 2.5
*->cYFlvFLqtgifAEvvKDAlkDyimtkPaPtssvkvtvi<-*
cYFlv L E+ +D + Dy+ +P+ ts k vi
R10E11.4 20 CYFLVLLVLDL--EITRDLMTDYVDPRPLQTSYHKLCVI 56
Galactosyl_T_2: domain 1 of 1, from 1 to 279: score 546.5, E = 2.8e-169
*->CPersPillLvGpllisfssiqfltleelaaenPevepGGryrPrdC
++++++ l+L+G++lis+++++fl+l++l++e+++++++++++Pr++
R10E11.4 1 MKLKTR-LILSGTILISLAACYFLVLLVLDLEITRDLMTDYVDPRPL 46
kpSrqKvAiIIPyRnReeHLryLlphLhPfLqRQrLdfgiyVIeQtgpet
++S++K+++I+PyR+R+e+Lr+++ph+++fL++Q+++++i++I+Qt+p++
R10E11.4 47 QTSYHKLCVIVPYRDRLEELREFSPHMSKFLHNQNVSHHILIINQTDPLR 96
FNRAkLlNVGflEAlKegnwDCfifHDVDLlPedDrNlYkCpemGPRHla
FNRA+L+NVG++EA+++g+ D+++++DVDLlP++++++Y++p++ +++++
R10E11.4 97 FNRASLINVGWNEADRLGC-DYMVMNDVDLLPVNPEVPYDFPGI-GVIRH 144
vavdkfgYkLpYkeyFGGVsaLtreQFrKiNGfsNeYWGWGGEDDDlynR
++++++++k++Y++++GG+++Lt+++++K+NG+sN+YWGWG+EDD++y+R
R10E11.4 145 ITSPQYHPKYHYEKFIGGILMLTLKDYKKLNGMSNKYWGWGLEDDEFYLR 194
vvlagmkisRPeGletGkYkMikHvkgGWnvnPrdrgnesLYDmLnkaLG
+++++++++R++Gl+t+++++++H++g ++r+++
R10E11.4 195 IIDSKLNLTRVSGLSTDSSNTFRHIHG------PKRKRD----------- 227
vqaGWnvhPnskWPLRLFDsvnhaPaeGaGytpnpeRfklleksrerqhv
ytp++++++++e++r+r+hv
R10E11.4 228 ------------------------------YTPKKNDKNQWEIKRKRDHV 247
DGLnslrYqivlkveldpLYtniTVdigalpe<-*
+GL+++rY+i+++++ld+++t++T++++al++
R10E11.4 248 SGLHDVRYLIDSRQLLDFSGTSVTIINVALHC 279