Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/R10E11.4
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Query:  R10E11.4  CE00306  locus:sqv-3 Galactosyltransferase status:Confirmed SW:P34548 protein_id:CAA82350.1

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N
--------       -----------                              -----    ------- ---
Galactosyl_T_2 Galactosyltransferase                    546.5   2.8e-169   1
EBNA1          Epstein Barr virus nuclear antigen-1,      4.0        2.5   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
EBNA1            1/1      20    56 ..   101   139 ..     4.0      2.5
Galactosyl_T_2   1/1       1   279 [.     1   329 []   546.5 2.8e-169

Alignments of top-scoring domains:
EBNA1: domain 1 of 1, from 20 to 56: score 4.0, E = 2.5
                   *->cYFlvFLqtgifAEvvKDAlkDyimtkPaPtssvkvtvi<-*
                      cYFlv L      E+ +D + Dy+  +P+ ts  k  vi
    R10E11.4    20    CYFLVLLVLDL--EITRDLMTDYVDPRPLQTSYHKLCVI    56

Galactosyl_T_2: domain 1 of 1, from 1 to 279: score 546.5, E = 2.8e-169
                   *->CPersPillLvGpllisfssiqfltleelaaenPevepGGryrPrdC
                      ++++++ l+L+G++lis+++++fl+l++l++e+++++++++++Pr++
    R10E11.4     1    MKLKTR-LILSGTILISLAACYFLVLLVLDLEITRDLMTDYVDPRPL 46

                   kpSrqKvAiIIPyRnReeHLryLlphLhPfLqRQrLdfgiyVIeQtgpet
                   ++S++K+++I+PyR+R+e+Lr+++ph+++fL++Q+++++i++I+Qt+p++
    R10E11.4    47 QTSYHKLCVIVPYRDRLEELREFSPHMSKFLHNQNVSHHILIINQTDPLR 96

                   FNRAkLlNVGflEAlKegnwDCfifHDVDLlPedDrNlYkCpemGPRHla
                   FNRA+L+NVG++EA+++g+ D+++++DVDLlP++++++Y++p++ +++++
    R10E11.4    97 FNRASLINVGWNEADRLGC-DYMVMNDVDLLPVNPEVPYDFPGI-GVIRH 144

                   vavdkfgYkLpYkeyFGGVsaLtreQFrKiNGfsNeYWGWGGEDDDlynR
                   ++++++++k++Y++++GG+++Lt+++++K+NG+sN+YWGWG+EDD++y+R
    R10E11.4   145 ITSPQYHPKYHYEKFIGGILMLTLKDYKKLNGMSNKYWGWGLEDDEFYLR 194

                   vvlagmkisRPeGletGkYkMikHvkgGWnvnPrdrgnesLYDmLnkaLG
                   +++++++++R++Gl+t+++++++H++g      ++r+++
    R10E11.4   195 IIDSKLNLTRVSGLSTDSSNTFRHIHG------PKRKRD----------- 227

                   vqaGWnvhPnskWPLRLFDsvnhaPaeGaGytpnpeRfklleksrerqhv
                                                 ytp++++++++e++r+r+hv
    R10E11.4   228 ------------------------------YTPKKNDKNQWEIKRKRDHV 247

                   DGLnslrYqivlkveldpLYtniTVdigalpe<-*
                   +GL+++rY+i+++++ld+++t++T++++al++
    R10E11.4   248 SGLHDVRYLIDSRQLLDFSGTSVTIINVALHC    279



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