hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/R10D12.12
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  R10D12.12  CE23919    status:Confirmed TR:P92012 protein_id:CAB03253.2

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
Glyco_tran_28_C Glycosyltransferase family 28 C-termi   178.6    1.7e-51   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
Glyco_tran_28_C   1/1       2   173 ..     1   179 []   178.6  1.7e-51

Alignments of top-scoring domains:
Glyco_tran_28_C: domain 1 of 1, from 2 to 173: score 178.6, E = 1.7e-51
                   *->tifVtgGASqGaraLNrlvlevdkllelkkrrikyqvlhqtGkgady
                       +fVt+G S+ +++L+++vl+ + l +lkk  +++++ +q+Gkg ++
   R10D12.12     2    SCFVTVG-STLFEDLINQVLCEASLENLKK-IGVKKIRLQIGKG-NF 45

                   epkkqklvykkfg........alinvevfpfidnmaeyikaAddlVIsRA
                   +++++++v+ + ++++++ + ++++++++++++++ e++++A  +VI+++
   R10D12.12    46 NQDVIDRVFGETSgdegsvkcDGLDIDYYRYKPSLSEDMAEAL-IVIGHG 94

                   GAgTiaEllalGkPaIlVPnpkaageHqdnNAlelvkagaaevllqkelt
                   GAgT++E+lal++P I V n+k    ++dn+++el+ ++ +e++l++++
   R10D12.12    95 GAGTCLEVLALHLPFITVTNDK----LMDNHQAELAVQLSDEGYLLQCT- 139

                   llpekLaeallklllkplklyemakaagaakrikdaierl<-*
                     p+ L+e++lk +l++l++++ +++    k+++++i++l
   R10D12.12   140 --PSTLPETILKENLFSLRQFAAPSK----KFVAEHIKQL    173

[DB home][top]