Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/R07E5.2
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: R07E5.2 CE00657 Mer5 (mouse) status:Confirmed SW:Q21824 protein_id:CAA83619.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
AhpC-TSA AhpC/TSA family 248.0 1.3e-70 1
X Trans-activation protein X 1.7 5.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
X 1/1 16 45 .. 1 33 [. 1.7 5.9
AhpC-TSA 1/1 35 184 .. 1 161 [] 248.0 1.3e-70
Alignments of top-scoring domains:
X: domain 1 of 1, from 16 to 45: score 1.7, E = 5.9
*->MAARLcCQLDpsRDVLlLRPlgaqssGpplsgp<-*
A R QL sR L LRPlg + p + g+
R07E5.2 16 VATR---QLSTSRALLSLRPLGPKNTVPAFKGT 45
AhpC-TSA: domain 1 of 1, from 35 to 184: score 248.0, E = 1.3e-70
*->vGkkAPdFsltavvgeefkeitlkDfkGKkwvVLfFyPlDFTpVCpT
+ +++P F+ tavv+++fk i+ D+kGK w+V+fFyPlDFT+VCpT
R07E5.2 35 PKNTVPAFKGTAVVDGDFKVISDQDYKGK-WLVMFFYPLDFTFVCPT 80
EliafsdlapEFkklgvedVLgvSvDspfsHkaWikdereegglgklnyp
E+ia+ d+a EF+ lg+e V ++S+Ds+fsH+aW +++r+ gglg++ +p
R07E5.2 81 EIIAYGDRANEFRSLGAE-VVACSCDSHFSHLAWVNTPRKDGGLGDMDIP 129
llsDWpnreisrayGvldekeeeGialRliaRglFiIDgpdgiirysevn
ll+D n++i+ +Gvld e G+++R glF+ID p+g++r+ +
R07E5.2 130 LLAD-FNKKIADSFGVLDK--ESGLSYR----GLFLID-PSGTVRHTTC- 170
ndevggrnadeilr<-*
nd+++gr++de lr
R07E5.2 171 NDLPVGRSVDETLR 184