Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/R07A4.1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: R07A4.1 CE18123 locus:egl-36 potassium channel protein status:Partially_confirmed TR:O62350 protein_id:CAA92011.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ion_trans Ion transport protein 160.7 2.4e-44 1
K_tetra K+ channel tetramerisation domain 151.9 4.5e-42 1
PMP Plasmid Maintenance Protein 1.5 7.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
K_tetra 1/1 37 134 .. 1 111 [] 151.9 4.5e-42
PMP 1/1 265 283 .. 1 20 [. 1.5 7.5
ion_trans 1/1 260 441 .. 1 228 [] 160.7 2.4e-44
Alignments of top-scoring domains:
K_tetra: domain 1 of 1, from 37 to 134: score 151.9, E = 4.5e-42
*->ErvrLNVGGkrFeTsksTLtrfkpdTlLgrllktdsdvhearlrlcd
Er++LNVGG+r+eT++ TL ++ p T+L+rl s +
R07A4.1 37 ERIVLNVGGVRHETYQATLKKI-PATRLSRLTP--S---------LA 71
fyddetgEyFFDRsPkhFetILnfYRtGdGkLhrp.evcldsfleEleFy
+d+ +EyFFDR+P +F ILn+YRt GkLh+p++vc f+eEl+++
R07A4.1 72 NFDPLLNEYFFDRHPAVFAMILNYYRT--GKLHYPtDVCGPLFEEELQYW 119
gldelaiesCcedeY<-*
gld + e+Cc++
R07A4.1 120 GLDASDTEPCCWMQL 134
PMP: domain 1 of 1, from 265 to 283: score 1.5, E = 7.5
*->knrKYlvlytllliirlllc<-*
++ +++tl liir+ +c
R07A4.1 265 EML-CNIWFTLELIIRFVFC 283
ion_trans: domain 1 of 1, from 260 to 441: score 160.7, E = 2.4e-44
*->ileildyvftviFtlEmllkiialgfklhsriprkYlrspwnilDfl
i+ ++++++++FtlE++++++ ++ k ++++sp n++D++
R07A4.1 260 IFGQIEMLCNIWFTLELIIRFVFCPSK------IRFFKSPLNMIDLV 300
vvlpslislilflsgggsvklirlreslflalse.vsygilsvlrllRll
++l ++++ +++++ e+ +++ +l+++R
R07A4.1 301 ATLSFYADAMMVRVV------------------EdEPKDVVEFLSMIR-- 330
RvLRllrllrrapglfefelrtlGWklqslg.rslkslfnlllllllllf
++rl+++++ + ++ lq+l+++ +s +l+ll+++l++
R07A4.1 331 ----IFRLFKLTQ------HHQG---LQILIhTFRASAKELILLVFFLIL 367
ifaiigvqlfggelnkccnpingntnFdnfgeaflwlFqtlTteGwgdim
++ i++++++++e+ + n+n+ F +++ +++w++ t+Tt+G+gd++
R07A4.1 368 GIVIFAALVYYAEKM----EANPNNQFQSIPLGLWWAICTMTTVGYGDMT 413
pdtlagtvlgkiyfvifiilggflllNlfiavi<-*
p t +g +++ +++ ++g+l+++l+++vi
R07A4.1 414 PH----TSFGRLVG-SLCAVMGVLTIALPVPVI 441