Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/R06F6.4
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Query: R06F6.4 CE16303 status:Partially_confirmed SW:Q09415 protein_id:CAA86783.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
zf-MYND MYND finger 68.8 1.8e-21 1
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 7.0 0.15 1
PI3Ka Phosphoinositide 3-kinase family, accessory 4.1 4.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PI3Ka 1/1 23 38 .. 199 215 .] 4.1 4.3
zf-MYND 1/1 26 64 .. 1 43 [] 68.8 1.8e-21
zf-C3HC4 1/1 251 273 .. 28 50 .] 7.0 0.15
Alignments of top-scoring domains:
PI3Ka: domain 1 of 1, from 23 to 38: score 4.1, E = 4.3
*->Esylrectgtsledlnk<-*
Esy+ +c ts+ +l+k
R06F6.4 23 ESYCNQC-LTSMAELKK 38
zf-MYND: domain 1 of 1, from 26 to 64: score 68.8, E = 1.8e-21
*->CanCgkeatksrqLkkCsrCknarYCSkeCQrkdWllgHkreC<-*
C++C++++++ LkkCs+C++ +YCS+eCQr+dW+ Hk+eC
R06F6.4 26 CNQCLTSMAE---LKKCSACRRLAYCSQECQRADWK-LHKVEC 64
zf-C3HC4: domain 1 of 1, from 251 to 273: score 7.0, E = 0.15
*->kyfCrsClerWls..gnttvkCplC<-*
++ C C++ W ++++n + C+lC
R06F6.4 251 AWTCGICVKGWMRnkENGQ--CELC 273