Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm4/seq/R01E6.3a
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Query:  R01E6.3a  CE29433  locus:cah-4 carbonic anhydrase status:Confirmed TR:Q21614 protein_id:CAA92190.2

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N
--------       -----------                              -----    ------- ---
carb_anhydrase Eukaryotic-type carbonic anhydrase       144.1    2.5e-39   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
carb_anhydrase   1/1     117   278 ..   102   283 .]   144.1  2.5e-39

Alignments of top-scoring domains:
carb_anhydrase: domain 1 of 1, from 117 to 278: score 144.1, E = 2.5e-39
                   *->LkQfHFHWGGAssddqGSEHTVDGkkYaaELHLVHWNstKYgsykeA
                      L QfH HWG  s    GSEH +DGk  + E H V WN t Y+s+  A
    R01E6.3a   117    LAQFHAHWG--SNSKEGSEHFLDGKQLSGEVHFVFWN-TSYESFNVA 160

                   vskpDGLAVlGvFlkvGdyqenpglqkvvDaLssIktKGksatft...nF
                   +skpDGLAV+GvFlk G  + n  +  ++D     k  G  ++++ ++ F
    R01E6.3a   161 LSKPDGLAVVGVFLKEG--KYNDNYHGLIDTVR--KATGNATPIAmpkDF 206

                   DPstLLPseklrDYWTYpGSLTTPPLtEsVtWiVlkepIsvSseQllkFR
                    ++ LLPs++ r + TY+GSLTTPP  E+V+W+++ ep++vS  Ql  +R
    R01E6.3a   207 HIEHLLPSPDKREFVTYLGSLTTPPYNECVIWTLFTEPVEVSFGQLNVLR 256

                   sLlfnaegeeevpGCdGimvdNyRPtQPLkgRvVrASF<-*
                   +         ++p        N+R +Q   +R++r+SF
    R01E6.3a   257 N---------IIP-------ANHRACQDRCDREIRSSF    278



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