Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm4/seq/R01E6.3b
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Query: R01E6.3b CE29434 locus:cah-4 carbonic anhydrase status:Confirmed TR:Q8WQD8 protein_id:CAD18873.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
carb_anhydrase Eukaryotic-type carbonic anhydrase 144.1 2.5e-39 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
carb_anhydrase 1/1 72 233 .. 102 283 .] 144.1 2.5e-39
Alignments of top-scoring domains:
carb_anhydrase: domain 1 of 1, from 72 to 233: score 144.1, E = 2.5e-39
*->LkQfHFHWGGAssddqGSEHTVDGkkYaaELHLVHWNstKYgsykeA
L QfH HWG s GSEH +DGk + E H V WN t Y+s+ A
R01E6.3b 72 LAQFHAHWG--SNSKEGSEHFLDGKQLSGEVHFVFWN-TSYESFNVA 115
vskpDGLAVlGvFlkvGdyqenpglqkvvDaLssIktKGksatft...nF
+skpDGLAV+GvFlk G + n + ++D k G ++++ ++ F
R01E6.3b 116 LSKPDGLAVVGVFLKEG--KYNDNYHGLIDTVR--KATGNATPIAmpkDF 161
DPstLLPseklrDYWTYpGSLTTPPLtEsVtWiVlkepIsvSseQllkFR
++ LLPs++ r + TY+GSLTTPP E+V+W+++ ep++vS Ql +R
R01E6.3b 162 HIEHLLPSPDKREFVTYLGSLTTPPYNECVIWTLFTEPVEVSFGQLNVLR 211
sLlfnaegeeevpGCdGimvdNyRPtQPLkgRvVrASF<-*
+ ++p N+R +Q +R++r+SF
R01E6.3b 212 N---------IIP-------ANHRACQDRCDREIRSSF 233