Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/M01F1.7
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Query: M01F1.7 CE18065 RETINAL DEGENERATION B PROTEIN (PROBABLE CALCIUM TRANSPORTER RDGB) status:Partially_confirmed TR:O62119 protein_id:CA
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
IP_trans Phosphatidylinositol transfer protein 666.4 1.5e-196 1
DDHD DDHD domain 204.3 5.3e-58 2
acid_phosphat_B Acid phosphatase (Class B) 5.0 2.5 1
SAM_PNT Sterile alpha motif (SAM)/Pointed dom 4.2 7.6 1
Xlink Extracellular link domain 0.9 7.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
IP_trans 1/1 1 253 [. 1 256 [] 666.4 1.5e-196
Xlink 1/1 473 483 .. 1 12 [. 0.9 7.8
DDHD 1/2 512 589 .. 1 92 [. 118.1 4.1e-33
SAM_PNT 1/1 615 648 .. 1 36 [. 4.2 7.6
DDHD 2/2 604 651 .. 219 266 .] 86.2 6.4e-24
acid_phosphat_B 1/1 810 847 .. 123 161 .. 5.0 2.5
Alignments of top-scoring domains:
IP_trans: domain 1 of 1, from 1 to 253: score 666.4, E = 1.5e-196
*->mLiKEYrilLPlsvdEYqvaQLYmiakkSreeshGegsGVEilaNeP
mLiKEYrilLP++v+EY++aQLYmi+kkSr++shG++sGVEi++N+P
M01F1.7 1 MLIKEYRILLPMTVQEYRIAQLYMIQKKSRLDSHGQDSGVEIISNKP 47
YedgPGgkGQYThKiYHvgskiPawirmllPkgALevhEeawnAYPytrT
Y+dgPGg+GQYT+KiYH+gs+iPawir++lP++ALe+hEe+wnAYP+t+T
M01F1.7 48 YTDGPGGSGQYTFKIYHIGSRIPAWIRTVLPTNALEAHEESWNAYPVTKT 97
rytcpymvekFsieiETyykpDlGqqeNVfnLsgkdkktriidyiDivkr
ry++p m+++Fs+e+ET+y++D+GqqeNVfnL++kdk+triidy+D+vk
M01F1.7 98 RYSTP-MMDRFSLEVETLYFDDHGQQENVFNLNEKDKSTRIIDYMDFVK- 145
dqvasgdYkaeEDPklfkSvkTgRGPLgddWkkelaktgdlplMcAYKLc
d+++s+dY+aeEDPkl++S++T+RGPL+ddW++e++k+g lp+McAYKLc
M01F1.7 146 DPISSHDYCAEEDPKLYRSETTNRGPLNDDWVAEHLKKG-LPIMCAYKLC 194
kVeFryWGlQtkvEkFIhdvalrrvmlraHRQawcWqDeWtdLtmeDIRr
kVeFryWG+Qt++E++Ihd+alr++m+raHRQaw+WqDeWt+Ltm+DIR+
M01F1.7 195 KVEFRYWGMQTRAERWIHDLALRNTMMRAHRQAWAWQDEWTGLTMNDIRK 244
LEeetareL<-*
LE+e+a++L
M01F1.7 245 LEAEAALHL 253
Xlink: domain 1 of 1, from 473 to 483: score 0.9, E = 7.8
*->GeVFhyrapsgR<-*
G++F+y+a++ R
M01F1.7 473 GGIFLYEAMT-R 483
DDHD: domain 1 of 2, from 512 to 589: score 118.1, E = 4.1e-33
*->LdFkvenfFafGSPlGlfltiRgtkiGDRPEFPnldsldlavsrpaC
L+F+++++F++G+PlGl+l++R+ ld ++++ +++C
M01F1.7 512 LSFQPSTVFLLGCPLGLTLMQRK-----------LDGSEIDG-LDSC 546
kqfYNIFHPlDPvAYRLEPLvvpefshikPvkIphykkrprLgle<-*
+ ++N+++PlDP+++R+EP+++ ++s+++P+++p+y+++p Lg++
M01F1.7 547 Q-LFNLYYPLDPCGARIEPVLDGQLSCVPPYNVPKYQRYP-LGDG 589
SAM_PNT: domain 1 of 1, from 615 to 648: score 4.2, E = 7.6
*->pssfkkeqkrlgipadlRtdPrlWtedhVleWLewa<-*
++++ ++ ++++p+ ++ +W +++V+ +L+++
M01F1.7 615 CPNSMVALPSSALPN--ILHASYWESCDVASFLLRQ 648
DDHD: domain 2 of 2, from 604 to 651: score 86.2, E = 6.4e-24
*->ngtkRIDYvLqePaallafnsYlsalksHasYWeSeDvAlFlLkeiy
+g+kRID+ L++P++++a +s +++++ HasYWeS+DvA+FlL++++
M01F1.7 604 WGSKRIDNLLYCPNSMVALPSSALPNILHASYWESCDVASFLLRQFV 650
r<-*
r
M01F1.7 651 R 651
acid_phosphat_B: domain 1 of 1, from 810 to 847: score 5.0, E = 2.5
*->gkAqpaipg.alRelynyllelGvkIffisgRsettlraa<-*
gk+ p+++++a+ + y +e G+ I++++ R++ +r +
M01F1.7 810 GKD-PRVRPgAV-DVVRYWQEQGYLIIYLTARPDMQQRVV 847