Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/M01E5.2
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Query: M01E5.2 CE12276 GTP-binding protein status:Partially_confirmed TR:O45691 protein_id:CAB07637.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
GTP1_OBG GTP1/OBG family 176.6 4.2e-49 1
MMR_HSR1 GTPase of unknown function 11.4 0.046 1
FeoB Ferrous iron transport protein B 9.7 0.03 1
DUF258 Protein of unknown function, DUF258 7.2 0.43 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
MMR_HSR1 1/1 190 205 .. 133 148 .. 11.4 0.046
FeoB 1/1 193 219 .. 1 27 [. 9.7 0.03
GTP1_OBG 1/1 49 314 .. 1 292 [] 176.6 4.2e-49
DUF258 1/1 329 355 .. 1 29 [. 7.2 0.43
Alignments of top-scoring domains:
MMR_HSR1: domain 1 of 1, from 190 to 205: score 11.4, E = 0.046
*->rVgviGyPNVGKSSLI<-*
++g++G+PN GKSSL+
M01E5.2 190 TAGLVGFPNAGKSSLL 205
FeoB: domain 1 of 1, from 193 to 219: score 9.7, E = 0.03
*->LvGNPNVGKSTLFNALTGanqkVGNWP<-*
LvG PN+GKS+L+ A++ a kV+ +P
M01E5.2 193 LVGFPNAGKSSLLRAISRAKPKVASYP 219
GTP1_OBG: domain 1 of 1, from 49 to 314: score 176.6, E = 4.2e-49
*->gGngekifrrEkempktgPnggtgghgGdlkakvdkllrtLldfryk
gGng+++f r +p +gP+gg+gghgG +++ +++ L +
M01E5.2 49 GGNGMVSFFRGYRKPFGGPDGGDGGHGGHVVFRASRSSKDLST--VH 93
khgkaekGkeGfdvnksGdagvdligfvpvGtsvldseRSIltstlsDla
+ +a +G+ G ++ ++G++++ + vp Gt++ ++ +t+ +l
M01E5.2 94 SIVRAQNGEFGRSKSCHGKSADHKEVEVPLGTVFKADG-----NTIFELN 138
aygfttLtavgGvggygnahakiqildlPgiieggsdGkgRrrqvlevkr
+++a+gGvgg+gn+ ++ + P +e g +G++ +e +
M01E5.2 139 NENDMFIAARGGVGGRGNQFYVSNEVRKPFKAEYGGEGEE-LIYDVEMRV 187
tADVglvglPnagkStliraiseakpkiagyrlttlvPNLgvvkkdtRKK
A glvg+PnagkS+l+rais akpk a y++ttl P +gvv +++
M01E5.2 188 MATAGLVGFPNAGKSSLLRAISRAKPKVASYPFTTLHPHIGVVFYED--- 234
IQggifvmAdvPGLiegAsegiglglsFlrHIeraevLihvdDatvdDfI
+ +Ad+PGLie + +glg+sFl+HIer+e L v+D ++ +
M01E5.2 235 --FEQIAVADIPGLIEDSHLNKGLGISFLKHIERCESLWYVLDYSTGSL- 281
dvpeenlrvyipeLyvynllkKIDqvsLeekprlvNLvrnpidvp<-*
++ ++ lr eL+ y +L+++ + v n+id+
M01E5.2 282 TDQYKMLR---VELEGYQ-------KGLGDRASTI--VINKIDLS 314
DUF258: domain 1 of 1, from 329 to 355: score 7.2, E = 0.43
*->yrniGYevlftSaktgdGldeLaevLrgk<-*
+++++v+++Sa ++ Gl++L e+Lr +
M01E5.2 329 --FPNLPVFPVSAQQRIGLEPLLEHLREQ 355