Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K11D9.3
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Query: K11D9.3 CE20002 Sugar (and other) transporter status:Partially_confirmed TR:Q9XTG8 protein_id:CAB07265.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
sugar_tr Sugar (and other) transporter 42.6 1.5e-11 2
CbiQ Cobalt transport protein 5.9 0.95 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
sugar_tr 1/2 92 232 .. 61 221 .. 32.8 1e-08
CbiQ 1/1 329 360 .. 1 32 [. 5.9 0.95
sugar_tr 2/2 333 461 .. 341 488 .] 17.0 0.00038
Alignments of top-scoring domains:
sugar_tr: domain 1 of 2, from 92 to 232: score 32.8, E = 1e-08
*->flGrliGslfaGklgdrfGRkksllialvlfviGallsgaapgytTi
f+G l+G +++G+ +d GRk+ +al l + +++++g+ap
K11D9.3 92 FAGVLCGTFSFGAVSDVVGRKPVAVFALSLGILMNFVTGLAP----- 133
GlwafyllivGRvlvGlgvGgasvlvPmYisEiAPkalRGalgslyqlai
++ +l+ R+++Gl+vGg v+v +++ E+ + R al ++++++
K11D9.3 134 ---NYQVLLGIRFFLGLSVGGTLVVVCTFVMEMLLPQQRMALRAFFNWG- 179
tiGilvAaiiglglnktnndsalnswgWRiplglqlvpalllligl.lfl
vA +++ +++ + WR + + ++v al+ li++ +
K11D9.3 180 -----VARLMMTLIAMALPE-------WRMSSIACAVAALPALIIIvFVF 217
PESPRwLvekgklee<-*
PESP wL kg+l+e
K11D9.3 218 PESPTWLHNKGRLDE 232
CbiQ: domain 1 of 1, from 329 to 360: score 5.9, E = 0.95
*->gsswlHrldprvKLiwllllvllvvlppgpvt<-*
+s+ +++l+++ L++++++++l+++ ++++t
K11D9.3 329 PSFRRRTLHQGAQLVVCICFLILTFMTFNGYT 360
sugar_tr: domain 2 of 2, from 333 to 461: score 17.0, E = 0.00038
*->RRpllllGaagmaicflilgasigvallllnkpkdpsskaagivaiv
RR+l+ ++ +icflil +++ n+ + g +++
K11D9.3 333 RRTLHQGAQLVVCICFLIL------TFMTFNG-------YTGLAFLI 366
fillfiafFalgwGpipwvilsElFPtkvRskalalataanwlanfiigf
l+ f++ +w +++ E + t +R++a++ + + ++++++++
K11D9.3 367 VNLIGTVFIEYTWD-ACYLCAVESMETACRASATGTCSLVARIGAILAP- 414
lfpyitgaiglalggyvflvfagllvlfilfvfffvPETkGrtLEeieel
++++ +l ++++v+l + l+ + ++ +ff++ETk++ L+ ++ +
K11D9.3 415 ----MLNYANLWWPPSVYLTVVLLGTINLIISYFFLVETKNVNLDNVHID 460
f<-*
K11D9.3 461 P 461