Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/K11C4.1
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Query: K11C4.1 CE12108 serine\/threonine-protein kinase status:Partially_confirmed TR:Q94277 protein_id:AAB18314.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pkinase Protein kinase domain 43.5 5.6e-11 1
PadR Transcriptional regulator PadR-like family 4.1 8.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
pkinase 1/1 19 194 .. 1 169 [. 43.5 5.6e-11
PadR 1/1 273 288 .. 38 53 .. 4.1 8.6
Alignments of top-scoring domains:
pkinase: domain 1 of 1, from 19 to 194: score 43.5, E = 5.6e-11
*->yelleklGeGsfGkVykakhkdktgkiVAvKilkkekesikekrflr
+++ +klGeG+fG Vy +++ g + A+K e+i+ +
K11C4.1 19 FTVFKKLGEGTFGAVYAVRDD--AGAEHALKAEL-ATEKIPL--LKL 60
EiqilkrLs...HpNIvrligvfedtddhlylvmEymegGdLfdylrrng
E++++++Ls ++ ++ +li+ + +++ y+vm ++++ +L d +
K11C4.1 61 ELYVMQKLSmkgPKHMATLIDKGR-HENFNYIVMKFLGK-SLQDAKKTGP 108
.gplsekeakkialQilrGleYLHsngivHRDLKpeNILlden....dgt
+g+l+ a+ Q l++le LH +g++HRD+Kp N+ l + + ++ +
K11C4.1 109 dGHLTLGSAIGASIQCLEALEELHWCGFLHRDVKPGNFCLGRAelgeLRK 158
vKiaDFGLArlle.......sssklttfvGTpwYmmA<-*
+ + DFGL+r+++++++ ++ + GTp+Y +
K11C4.1 159 IFVLDFGLCRKFVddrnvmlQPRRKAPYRGTPRYA-P 194
PadR: domain 1 of 1, from 273 to 288: score 4.1, E = 8.6
*->ffrpseGtLYPiLkrL<-*
f++p++G +Y +LkrL
K11C4.1 273 FMEPNYGLIYSTLKRL 288